Detail information of GWHGAAEX004010/evm.TU.scaffold_144.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG25020Tub family proteins
nrgi|672140260|ref|XP_008793936.1|0PREDICTED: tubby-like F-box protein 8 [Phoenix dactylifera]
Swissprottr|Q75HX5|TLP8_ORYSJ0Tubby-like F-box protein 8
trEMBLtr|B9SE66|B9SE66_RICCO0Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}
TAIRAT1G769000tubby like protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000154286981292627-
Transcript Sequence

Network for GWHGAAEX004010

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box531031.90E-08
PF01167.17Tub1174251.20E-98
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms56.310
SRR2545915Juvenile tuber42.580
SRP108465SRR5643513five period of Gastrodia elata101.520
SRR5643514five period of Gastrodia elata91.230
SRR5643515five period of Gastrodia elata88.200
SRR5643524five period of Gastrodia elata86.170
SRR5643525five period of Gastrodia elata91.260
SRR5643528five period of Gastrodia elata81.890
SRR5643658five period of Gastrodia elata89.320
SRR5643659five period of Gastrodia elata70.950
SRR5643660five period of Gastrodia elata73.440
SRR5643661five period of Gastrodia elata70.680
SRR5643662five period of Gastrodia elata72.460
SRR5643663five period of Gastrodia elata70.290
SRR5643664five period of Gastrodia elata83.680
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1118.880
SRR6049655Rhizomagastrodiae_C368-T10_good_1110.280
SRR6049656Rhizomagastrodiae_C368-T07_good_1117.930
SRR6049657Rhizomagastrodiae_C368-T07_good_1105.890
SRR6049658Rhizomagastrodiae_C368-T04_good_1122.460
SRR6049659Rhizomagastrodiae_C368-T04_good_1109.520
SRR6049660Rhizomagastrodiae_C368-T01_good_1108.330
SRR6049661Rhizomagastrodiae_C368-T04_good_194.110
SRR6049662Rhizomagastrodiae_C368-T01_good_1101.970
SRR6049663Rhizomagastrodiae_C368-T01_good_1113.440
SRR6049664Rhizomagastrodiae_C368-T10_good_1149.960
SRR6049665Rhizomagastrodiae_C368-T10_good_1149.960
SRP279888GastroGastrodia elata tuber 94.35
JuvenJuvenile tuber117.35
Mother_GastroMother tuber of Gastrodia elata 170.30
Mother_JuvenMother tuber of Juvenile 164.61