Detail information of GWHGAAEX004013/evm.TU.scaffold_144.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325107161|ref|YP_004268229.1| | 3.00E-63 | inorganic pyrophosphatase [Planctomyces brasiliensis DSM 5305] |
| KOG | KOG1626 | 2.00E-130 | Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 |
| nr | gi|695013255|ref|XP_009393406.1| | 8.45E-137 | PREDICTED: soluble inorganic pyrophosphatase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O48556|IPYR_MAIZE | 9.00E-133 | Soluble inorganic pyrophosphatase |
| trEMBL | tr|M0SGW6|M0SGW6_MUSAM | 3.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P22500_001} |
| TAIR | AT2G46860 | 2.00E-130 | pyrophosphorylase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000154 | 390730 | 394676 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004013
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00719.18 | Pyrophosphatase | 51 | 202 | 9.10E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01507 | ppa | Oxidative phosphorylation | map00190 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006796 | Biological Process | phosphate-containing compound metabolic process |
| GO:0004427 | Molecular Function | inorganic diphosphatase activity |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.400 |
| SRR2545915 | Juvenile tuber | 11.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.030 |
| SRR5643514 | five period of Gastrodia elata | 11.120 | |
| SRR5643515 | five period of Gastrodia elata | 20.600 | |
| SRR5643524 | five period of Gastrodia elata | 8.600 | |
| SRR5643525 | five period of Gastrodia elata | 33.250 | |
| SRR5643528 | five period of Gastrodia elata | 35.200 | |
| SRR5643658 | five period of Gastrodia elata | 37.370 | |
| SRR5643659 | five period of Gastrodia elata | 11.540 | |
| SRR5643660 | five period of Gastrodia elata | 9.710 | |
| SRR5643661 | five period of Gastrodia elata | 13.000 | |
| SRR5643662 | five period of Gastrodia elata | 14.230 | |
| SRR5643663 | five period of Gastrodia elata | 19.150 | |
| SRR5643664 | five period of Gastrodia elata | 9.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.60 |
| Juven | Juvenile tuber | 6.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.09 | |
| Mother_Juven | Mother tuber of Juvenile | 16.00 |