Detail information of GWHGAAEX004014/evm.TU.scaffold_144.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262194905|ref|YP_003266114.1|3.00E-94actin/actin family protein [Haliangium ochraceum DSM 14365]
KOGKOG06760Actin and related proteins
nrgi|225441455|ref|XP_002279672.1|0PREDICTED: actin-66 [Vitis vinifera]
Swissprottr|O81221|ACT_GOSHI0Actin
trEMBLtr|A5B0L2|A5B0L2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN71887.1}
TAIRAT5G098100actin 7

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000154395157397857+
Transcript Sequence

Network for GWHGAAEX004014

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00022.18Actin53771.70E-148
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms303.460
SRR2545915Juvenile tuber428.820
SRP108465SRR5643513five period of Gastrodia elata150.070
SRR5643514five period of Gastrodia elata170.770
SRR5643515five period of Gastrodia elata182.940
SRR5643524five period of Gastrodia elata133.680
SRR5643525five period of Gastrodia elata283.090
SRR5643528five period of Gastrodia elata190.920
SRR5643658five period of Gastrodia elata265.950
SRR5643659five period of Gastrodia elata284.670
SRR5643660five period of Gastrodia elata309.720
SRR5643661five period of Gastrodia elata276.580
SRR5643662five period of Gastrodia elata386.310
SRR5643663five period of Gastrodia elata411.140
SRR5643664five period of Gastrodia elata418.370
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1251.760
SRR6049655Rhizomagastrodiae_C368-T10_good_1261.850
SRR6049656Rhizomagastrodiae_C368-T07_good_1301.340
SRR6049657Rhizomagastrodiae_C368-T07_good_1269.640
SRR6049658Rhizomagastrodiae_C368-T04_good_1256.400
SRR6049659Rhizomagastrodiae_C368-T04_good_1256.500
SRR6049660Rhizomagastrodiae_C368-T01_good_1293.530
SRR6049661Rhizomagastrodiae_C368-T04_good_1282.020
SRR6049662Rhizomagastrodiae_C368-T01_good_1199.550
SRR6049663Rhizomagastrodiae_C368-T01_good_1274.570
SRR6049664Rhizomagastrodiae_C368-T10_good_1191.890
SRR6049665Rhizomagastrodiae_C368-T10_good_1191.890
SRP279888GastroGastrodia elata tuber 337.91
JuvenJuvenile tuber153.43
Mother_GastroMother tuber of Gastrodia elata 95.90
Mother_JuvenMother tuber of Juvenile 47.36