Gene detail

Detail information of GWHGAAEX004019/evm.TU.scaffold_144.19

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116624856\|ref\|YP_827012.1\|	7.00E-28	serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
KOG	KOG0589	2.00E-149	Serine/threonine protein kinase
nr	gi\|743858642\|ref\|XP_010942406.1\|	0	PREDICTED: serine/threonine-protein kinase Nek5 [Elaeis guineensis]
Swissprot	tr\|Q60DG4\|NEK4_ORYSJ	0	Serine/threonine-protein kinase Nek4
trEMBL	tr\|M0TEB8\|M0TEB8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P03280_001}
TAIR	AT3G44200	2.00E-149	NIMA (never in mitosis, gene A)-related 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000154	629991	653089	-

Transcript Sequence
>GWHTAAEX004019 ATGGAGTCTAGGATGGATCAATATGAGATAATGGAGCAGATTGGTAGAGGTGCGTTTGGAGCTGCCATTCTTGCTAACCACAAGGTGGAGAAAGTAAAGTATGTTTTGAAGAAAATTCGACTTGCCAGACAAACTGAGCGATGTCGGAGATCTGCTCACCAAGAAATGGCTCTTATTGCACGCCTTCAGCATCCTTTCATCGTTGAGTTTAAAGAAGCATGGGTGGAGAAGGGTTGTTTTGTTTGCATTGTAACGGGATATTGTGAAGGAGGAGATATGGCCGAGTTGATGAAAAAATCCAACGGGGAATATTTTCCCGAGGAGAAATTGCTGAAGTGGTTTGCACAACTTGTATTAGCTGTTGAGTATTTGCATTCCAACTTTGTTCTACATCGAGATCTCAAGTGCTCTAATATTTTTCTCACGAAGGATCAAGATGTTCGTTTAGGGGATTTTGGGCTGGCTAAAACTTTAAAAGCAAATGATTTAACTTCTTCTGTTGTTGGAACTCCGAATTACATGTGCCCAGAACTGCTTGCTGATATTCCCTATGGATTCAAGTCTGATATCTGGTCTCTTGGTTGCTGTATGTACGAGATGGCTGCTCATAGACCTGCATTCAAAGCCTTTGATATGGCCGGATTGATAAGTAAAGTAAATCGTTCTTCAATTGGACCATTGCCTACTTGTTATTCATCTTCAATGAAAGCACTCATCAGAAGCATGTTGCGAAAAAATCCAGAGCACCGGCCTAATGCTTCAGAATTATCTAGGCATCCGTATTTACTGCCCTACATTAATCATTTCTGCCCCTTCAATGATCCCTCGCGGACCATATCTCAGTCACCTGAAAAGCCTATTTCTTTCTCAAACGATAATGGTCCGAAGATTTTGTTCGAAAGCCAGCATAGCAGCAACTCTTGCTGTGACAAGGAGAGTTCTCTCTTAACTGATACAAGGGGCTGCAAAAGCGAATGCAGCCAGCCCTGCATATCGAGTAATGCGAGCGCTCGAGTTTCTGAAACACACAAACGAAGTTCAGCATCTTTGAGCTCCAATCAGCTTCAGCAAACAGAATCTAAACAGCCGAAGACATTGAGCAGTATTTTGTTTGATTTTAATGAAGCGAGAGATGGCAGAGATATTAGTTCTGTTATAATAAGCAGCCAAGCTCAGGCAGATATAGCATCAATCAACGGTTCTGTGGCAACTCCTGGCAGTTCTCCAAGACACCCAAAAAAACCTGTGCTGACTTTTGAATCAGCTGAACACAATAAGGATTCTTCAAATACCATAGCTCCAGAAAGTATTAAATCAATGCAGGCTTCAGGCACTTCTCCCAGCCTTGCTAAACAAGGAAGCGCTGATGGAATTCAATTAAAGACTAGATTAATAAGATCTCCTCCGCGCTCACGCATACCCAGGCTCGCCTTCAATCCCAGTAAGAAGCCATCTGATCCTAAGATTTCGAGCCCGGTAAACACCACTAGGACTAAGAAACCCCCCTTGAGGTTGTTAGCGAAAGAGCACGATAACAGTCCAGGCCGCATCATCAGCTGTAGCAACTGGAAAACAGAAAGGCCGCCACCGCTTGCTTTTCTCGAAAAGACCTCTCCCGATCAGATGTATGCCAGCAAAACAAAGGAACTTTCTTTCGTCGAGGAAGAGAGCAGGACATCCTCTGATCTGAAGGACGGGCTCTCATGCGCTGTTGAAACTCCGGAATCCAACCTCGACGTCTGTTCGAGCATTTCGGAAATGCACGAGGTTCTCGATTATTCTTTCGCAGAGCCTGGAAGAGCAAATGCTGATTTGAATTCTGCTGCGATAAACCCCAATGAGGAAGCAGCTTCGGACCGGAATTCGCCCTCTGGCGATGGCGGGTTCTCAGTGAGCGGACTTCTTTTGGCAATGGCGAATAACGTGCTGTCGGAGATGCCGGCCAATCATATGAATCCGGCTTTTGATGATGTCGTTCATGTTATAAGGCACAGCAGTTTCCGCGTTGAAAGCAAGGAGGCAATCCCTCGCGACAGGGAGGCCGACAAAGCGCCCAGTGCTGAAGGAGAAAGCAGTGCCGAGGGGGCATTAGCTGCGAAGTCGTTGAGGCAGAGGGCTGAGGCGCTCGAAGGATTGCTGGAGCTTTCGGCTGATCTTCTGCAGCATAAAAGGCTGGAAGAACTTGCTGCTGTACTGAAGCCCTTTGGGAAGGGCAGTCAGGTCTCTCCAAGAGAGACAGCCATCTGGCTGGCTAAGAGCTTCAGGGGGCTGATGGCCGACGACATCCGCCGTTCATCATGA

Network for GWHGAAEX004019

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	8	262	1.70E-63

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	NEK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.860
SRP064423	SRR2545915	Juvenile tuber	47.590
SRP108465	SRR5643513	five period of Gastrodia elata	45.100
	SRR5643514	five period of Gastrodia elata	41.120
	SRR5643515	five period of Gastrodia elata	35.970
	SRR5643524	five period of Gastrodia elata	41.460
	SRR5643525	five period of Gastrodia elata	44.030
	SRR5643528	five period of Gastrodia elata	39.490
	SRR5643658	five period of Gastrodia elata	71.370
	SRR5643659	five period of Gastrodia elata	37.010
	SRR5643660	five period of Gastrodia elata	37.620
	SRR5643661	five period of Gastrodia elata	36.760
	SRR5643662	five period of Gastrodia elata	33.600
	SRR5643663	five period of Gastrodia elata	37.030
	SRR5643664	five period of Gastrodia elata	36.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	58.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	58.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	62.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	52.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.970
SRP279888	Gastro	Gastrodia elata tuber	38.76
	Juven	Juvenile tuber	26.85
	Mother_Gastro	Mother tuber of Gastrodia elata	36.79
	Mother_Juven	Mother tuber of Juvenile	17.59