Detail information of GWHGAAEX004022/evm.TU.scaffold_144.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|219847608|ref|YP_002462041.1| | 2.00E-32 | chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM 9485] |
| nr | gi|672124788|ref|XP_008785791.1| | 0 | PREDICTED: uncharacterized protein LOC103704331 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 1.00E-50 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|F6HW90|F6HW90_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB58954.1} |
| TAIR | AT5G42140 | 0 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000154 | 680040 | 701257 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004022
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00415.17 | RCC1 | 96 | 144 | 9.60E-10 |
| PF00415.17 | RCC1 | 147 | 199 | 1.70E-09 |
| PF00415.17 | RCC1 | 203 | 251 | 2.80E-12 |
| PF00415.17 | RCC1 | 263 | 310 | 6.80E-11 |
| PF00415.17 | RCC1 | 315 | 364 | 4.10E-06 |
| PF00415.17 | RCC1 | 369 | 416 | 8.00E-16 |
| PF01363.20 | FYVE | 420 | 485 | 6.20E-12 |
| PF13713.5 | BRX_N | 674 | 698 | 1.00E-09 |
| PF08381.10 | BRX | 770 | 825 | 3.20E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.140 |
| SRR2545915 | Juvenile tuber | 32.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.310 |
| SRR5643514 | five period of Gastrodia elata | 18.420 | |
| SRR5643515 | five period of Gastrodia elata | 29.280 | |
| SRR5643524 | five period of Gastrodia elata | 19.590 | |
| SRR5643525 | five period of Gastrodia elata | 27.710 | |
| SRR5643528 | five period of Gastrodia elata | 45.750 | |
| SRR5643658 | five period of Gastrodia elata | 26.050 | |
| SRR5643659 | five period of Gastrodia elata | 17.320 | |
| SRR5643660 | five period of Gastrodia elata | 18.330 | |
| SRR5643661 | five period of Gastrodia elata | 15.780 | |
| SRR5643662 | five period of Gastrodia elata | 16.860 | |
| SRR5643663 | five period of Gastrodia elata | 15.180 | |
| SRR5643664 | five period of Gastrodia elata | 12.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.26 |
| Juven | Juvenile tuber | 16.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.59 | |
| Mother_Juven | Mother tuber of Juvenile | 32.32 |