Gene detail

Detail information of GWHGAAEX004026/evm.TU.scaffold_144.27

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0304	6.00E-112	mRNA deadenylase subunit
nr	gi\|695035768\|ref\|XP_009405313.1\|	6.45E-132	PREDICTED: probable CCR4-associated factor 1 homolog 11 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FMS6\|CAF1K_ARATH	2.00E-112	Probable CCR4-associated factor 1 homolog 11
trEMBL	tr\|K0A0E9\|K0A0E9_ELAGV	1.00E-130	CCR4-associated factor 1-related protein {ECO:0000313\|EMBL:AFS65102.1}
TAIR	AT5G22250	6.00E-112	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000154	838684	854606	-

Transcript Sequence
>GWHTAAEX004026 AACTCATCTCCGAACAAATCGACGGCGACATCATCGATCGCTCTTCGATGGATCTCGGAATCTGCATTCGGCGAGTGTGGGCTGATAACCTAGAAGCTGAGTTCGATCTCATCCGTTCCTGCGTCGAGAGATTCCCCTTCGCCGCCATGGACACGGAGTTCCCCGGCATCGTGCACCGCCCGCGCTGCCATGACTACTACCTGACCCCATCGGACCGCTACGCCATCCTCAAGGCCAACGTTGATTCTCTTCATCTCATACAGGTTGGCCTCTCCCTCTCCGATGCCGAGGGCAACCTCCCGGATCTCGGAAATGACGGGGCTCGCTTCATCTGGGAGTTCAATTTTGCCGATTTCGATCTCTTCCACGACGACTACGCACTGGAGTCCATCGAATTGCTTCGTGACAACGGGATCGATTTCGAGAAGAACAGGGCCGGGGGCATTGATTCCTGCCTCTTCGCCGAATTGCTCATGTCGTCCGGGCTGGTTTGCAACGATTCTTTCGTCAGTTGGGTGACGTTTCACAGCGTTTATGATTTTGGGTATTTGATCAAAATCCTTACTTGCGGCAAGTTGCCTAAGAGCATGGCCGAGTTTCTAGGCTTGGTTCAAGTTTTCTTTGGGGATAAGGTGTTCGATGTGAAGCATATGATACGGTACTGCGATGGGGTATACGGAGGGCTTGATAGGGTTGCCAAGGCCCTGAAAGTAAACCGCGCTGTGGGAATATGCCATCAGGCGGGGTCAGATAGTCTCTTAACTCTGCAAACCTTTCTTAAGCTGAGAAGGGGCTTGTTTGTGAAAAATGGGGTTGATGAGTATGCAGGAGTTCTTCATGGCTTGGAACTTCGGTAACTATTGTCAGAAGTCTTATGAAGAAGTTGTGTGCTTAGATGTCCATTTTTCTCCCGTTAAACTTTAATTGTTTAATAGAAACGAAAAAATCATTTATTTTATTCTGTGAATAGTGCTCAAGTTTTCTGGGATTTTAATGTCAGATAGTGGGACAAATTAGGGATGTTTGGTGGTTTTAAGGGGCTGTTTTGCTTGCAAGCTTCATGGGACGTAAATCCTTAAATCTTTCAAACAATATATGTGCACAAGTCCTCAGGTAACAGTTATCCAAATCCTTCGTTATCATTGAATAACTCCAATTGATCCCGCTAAGACCGTGAAAATACATTGAAGGGGCATTTTTTACTGGCCCAGCTTTACAATTTGCTGATATTTGGCTATCCCAAAATTTACATCCAAACGTCTAAGGATTTATCAGAATTTAACAAGTTATACACAAAACAATTTTCAGAATCTACTAAATCTTGTGTTTAAGGATTTACTAAATCCTTACATTCAGTGCAGTCGAATTCTAATTATAGATAAACTATAAAAAATAAATTTCTTACACAATAGTAAGTACATACTAAAATATACTTAAAAATTGATGAGGATGTGGGCTTGAAGCTTACAGGACGTCGGCATAACAAACAATTGCTGGGAGTAGCTAGACAAGGTCTGAAATGGCTTGTTGGAAGGCGGAAAGACTGCTTGCGATCAGTTGTGAGAAGCTCCCTCTTAGCTAGACAAGCACATTGAGCGCCTTTTTACAATGATGCAACTAATAGCTGGCTGGTTGCGGTGGGAAGCTTGGCAAGGGCATTTGGAGGGGGCAGCAAGGCCTGCCGGATGGTGGTGTAGTGGATTTCTCTGTTTATGGGGTAAATGAAAATTTCTTATTCTTGTTTCTATTTCTTAATTATATACTGATTTTACTTCAAATCAGACAGCCCTTTAATGAATTTGAAGAAATGTTATAAAGAAGCATCTGACAAATGATGGAGTAAATGTAAACTGGAGTTTATATTTGTAAGGATGGGATCTGCGTTTAAGAAGTTTAGTGTTGAAAAGCTTATTAGGAGGCTTAGACTAAGTTTGAGGAATGCATTCTTCTCTATCCTAACTATTAGAGTGAAGATCTCACATGCCGTTCTACCTGTTTTCCCAGTCATCAAGTTTCTTAATGCGAAATTTGGGAAAACATAATTTATTCTTTCAAAAATGGAGGGATCTGTATATTAGCAATCCCGGACACAAACCCAAATTCCTAGGAAAAAAACTTACATTGCCAGAAAATAGAGCAAGTTATTTCTTTGCCCATGGATCCTTGTAGTCAAATTGTTCTTACAGTCTCTTTAAAATTATACATGATTTTAAGTTCTCTTCTCCTATTGTAATACATTACACAGTGGAAATAGTTGATCACACGAAATTAGCTAGCATATGTTGGCTTATTTATATGATTAGATTATAACAAATATTGGGGTGCTTACTAATAATTTAAGCATAATTGCAGTGCATGTATTTCACCCACAAAATGTGATGCTATTTCTTGAGCCAACTTGAACTCATGCCACGAGTTCTATGATCATGGACAGTTTAATTGAAGATCCAAGCTGATGCTAAGAAGTTAAGTTTGAATGGGCATCCTTGTTAGCTATTTGAT

Network for GWHGAAEX004026

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04857.19	CAF1	10	133	1.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12581	CNOT7_8, CAF1, POP2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	73.270
SRP064423	SRR2545915	Juvenile tuber	65.310
SRP108465	SRR5643513	five period of Gastrodia elata	77.030
	SRR5643514	five period of Gastrodia elata	47.400
	SRR5643515	five period of Gastrodia elata	185.380
	SRR5643524	five period of Gastrodia elata	32.000
	SRR5643525	five period of Gastrodia elata	260.540
	SRR5643528	five period of Gastrodia elata	373.590
	SRR5643658	five period of Gastrodia elata	145.360
	SRR5643659	five period of Gastrodia elata	163.850
	SRR5643660	five period of Gastrodia elata	27.870
	SRR5643661	five period of Gastrodia elata	81.820
	SRR5643662	five period of Gastrodia elata	152.040
	SRR5643663	five period of Gastrodia elata	85.760
	SRR5643664	five period of Gastrodia elata	349.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	293.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	167.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	177.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	227.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	240.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	343.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	369.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	252.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	104.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	272.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	169.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	169.980
SRP279888	Gastro	Gastrodia elata tuber	41.83
	Juven	Juvenile tuber	14.27
	Mother_Gastro	Mother tuber of Gastrodia elata	368.61
	Mother_Juven	Mother tuber of Juvenile	135.21