Detail information of GWHGAAEX004027/evm.TU.scaffold_144.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2897 | 3.00E-126 | DNA-binding protein YL1 and related proteins |
| nr | gi|672177446|ref|XP_008808819.1| | 8.98E-155 | PREDICTED: SWR1 complex subunit 2 [Phoenix dactylifera] |
| Swissprot | tr|F4IP06|SWC2_ARATH | 3.00E-131 | SWR1 complex subunit 2 |
| trEMBL | tr|A0A096PRM5|A0A096PRM5_MAIZE | 3.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G003638_P01} |
| TAIR | AT2G36740 | 3.00E-126 | sequence-specific DNA binding transcription factors;DNA binding;DNA binding |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000154 | 856391 | 906804 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004027
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05764.12 | YL1 | 13 | 233 | 1.20E-34 |
| PF08265.10 | YL1_C | 265 | 292 | 3.90E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006338 | Biological Process | chromatin remodeling |
| GO:0043486 | Biological Process | histone exchange |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.290 |
| SRR2545915 | Juvenile tuber | 68.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.230 |
| SRR5643514 | five period of Gastrodia elata | 43.170 | |
| SRR5643515 | five period of Gastrodia elata | 40.350 | |
| SRR5643524 | five period of Gastrodia elata | 43.060 | |
| SRR5643525 | five period of Gastrodia elata | 58.470 | |
| SRR5643528 | five period of Gastrodia elata | 48.510 | |
| SRR5643658 | five period of Gastrodia elata | 60.440 | |
| SRR5643659 | five period of Gastrodia elata | 44.020 | |
| SRR5643660 | five period of Gastrodia elata | 45.070 | |
| SRR5643661 | five period of Gastrodia elata | 42.530 | |
| SRR5643662 | five period of Gastrodia elata | 43.570 | |
| SRR5643663 | five period of Gastrodia elata | 49.820 | |
| SRR5643664 | five period of Gastrodia elata | 51.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 56.42 |
| Juven | Juvenile tuber | 57.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.54 | |
| Mother_Juven | Mother tuber of Juvenile | 49.85 |