Detail information of GWHGAAEX004030/evm.TU.scaffold_144.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|385809238|ref|YP_005845634.1|3.00E-14peptidyl-prolyl cis-trans isomerase A [Ignavibacterium album JCM 16511]
KOGKOG08813.00E-25Cyclophilin type peptidyl-prolyl cis-trans isomerase
nrgi|743863510|ref|XP_010943810.1|3.73E-33PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-2 [Elaeis guineensis]
Swissprottr|Q9SIH1|CP18B_ARATH1.00E-25Peptidyl-prolyl cis-trans isomerase CYP18-2
trEMBLtr|J3MVA8|J3MVA8_ORYBR3.00E-32Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}
TAIRAT2G361303.00E-25Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015410789081082401+
Transcript Sequence

Network for GWHGAAEX004030

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00160.20Pro_isomerase891351.80E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12733PPIL1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.380
SRR2545915Juvenile tuber0.530
SRP108465SRR5643513five period of Gastrodia elata0.200
SRR5643514five period of Gastrodia elata0.080
SRR5643515five period of Gastrodia elata0.190
SRR5643524five period of Gastrodia elata0.330
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.080
SRR5643659five period of Gastrodia elata0.160
SRR5643660five period of Gastrodia elata0.270
SRR5643661five period of Gastrodia elata0.270
SRR5643662five period of Gastrodia elata0.090
SRR5643663five period of Gastrodia elata0.070
SRR5643664five period of Gastrodia elata0.080
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.830
SRR6049656Rhizomagastrodiae_C368-T07_good_10.150
SRR6049657Rhizomagastrodiae_C368-T07_good_10.340
SRR6049658Rhizomagastrodiae_C368-T04_good_10.520
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.080
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.490
SRR6049663Rhizomagastrodiae_C368-T01_good_10.410
SRR6049664Rhizomagastrodiae_C368-T10_good_10.410
SRR6049665Rhizomagastrodiae_C368-T10_good_10.410
SRP279888GastroGastrodia elata tuber 0.06
JuvenJuvenile tuber0.18
Mother_GastroMother tuber of Gastrodia elata 0.61
Mother_JuvenMother tuber of Juvenile 0.23