Detail information of GWHGAAEX004041/evm.TU.scaffold_144.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-34 | FOG: PPR repeat |
| nr | gi|357146098|ref|XP_003573875.1| | 3.71E-42 | PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Brachypodium distachyon] |
| Swissprot | tr|O82380|PP175_ARATH | 4.00E-35 | Pentatricopeptide repeat-containing protein At2g29760, chloroplastic (Precursor) |
| trEMBL | tr|I1I3R4|I1I3R4_BRADI | 1.00E-42 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G24690.1} |
| trEMBL | tr|I1I3R4|I1I3R4_BRADI | 9.00E-12 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G24690.1} |
| TAIR | AT2G29760 | 1.00E-34 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000154 | 1247682 | 1249659 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004041
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 27 | 55 | 0.39 |
| PF13041.5 | PPR_2 | 56 | 101 | 6.70E-08 |
| PF01535.19 | PPR | 153 | 182 | 0.00015 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.180 |
| SRR5643514 | five period of Gastrodia elata | 1.230 | |
| SRR5643515 | five period of Gastrodia elata | 1.850 | |
| SRR5643524 | five period of Gastrodia elata | 1.040 | |
| SRR5643525 | five period of Gastrodia elata | 0.380 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 2.640 | |
| SRR5643660 | five period of Gastrodia elata | 0.970 | |
| SRR5643661 | five period of Gastrodia elata | 1.140 | |
| SRR5643662 | five period of Gastrodia elata | 1.630 | |
| SRR5643663 | five period of Gastrodia elata | 1.350 | |
| SRR5643664 | five period of Gastrodia elata | 0.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.65 |
| Juven | Juvenile tuber | 1.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.84 | |
| Mother_Juven | Mother tuber of Juvenile | 1.85 |