Detail information of GWHGAAEX004043/evm.TU.scaffold_144.48


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41970FOG: PPR repeat
nrgi|743838112|ref|XP_010936605.1|0PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Elaeis guineensis]
Swissprottr|Q9SJZ3|PP169_ARATH0Pentatricopeptide repeat-containing protein At2g22410, mitochondrial (Precursor)
trEMBLtr|F6GU54|F6GU54_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43718.1}
TAIRAT2G224100SLOW GROWTH 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015413273401329148-
Transcript Sequence

Network for GWHGAAEX004043

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_241903.20E-08
PF01535.19PPR1141420.29
PF13041.5PPR_21431901.50E-10
PF01535.19PPR2182420.044
PF13041.5PPR_22743224.00E-11
PF13041.5PPR_23754245.40E-09
PF01535.19PPR4504740.24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.590
SRR2545915Juvenile tuber11.940
SRP108465SRR5643513five period of Gastrodia elata10.900
SRR5643514five period of Gastrodia elata11.830
SRR5643515five period of Gastrodia elata9.260
SRR5643524five period of Gastrodia elata10.550
SRR5643525five period of Gastrodia elata12.090
SRR5643528five period of Gastrodia elata8.100
SRR5643658five period of Gastrodia elata8.850
SRR5643659five period of Gastrodia elata15.640
SRR5643660five period of Gastrodia elata17.680
SRR5643661five period of Gastrodia elata13.010
SRR5643662five period of Gastrodia elata17.380
SRR5643663five period of Gastrodia elata16.160
SRR5643664five period of Gastrodia elata13.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.910
SRR6049655Rhizomagastrodiae_C368-T10_good_19.060
SRR6049656Rhizomagastrodiae_C368-T07_good_116.370
SRR6049657Rhizomagastrodiae_C368-T07_good_114.470
SRR6049658Rhizomagastrodiae_C368-T04_good_113.010
SRR6049659Rhizomagastrodiae_C368-T04_good_112.440
SRR6049660Rhizomagastrodiae_C368-T01_good_114.260
SRR6049661Rhizomagastrodiae_C368-T04_good_112.900
SRR6049662Rhizomagastrodiae_C368-T01_good_114.670
SRR6049663Rhizomagastrodiae_C368-T01_good_115.390
SRR6049664Rhizomagastrodiae_C368-T10_good_115.080
SRR6049665Rhizomagastrodiae_C368-T10_good_115.080
SRP279888GastroGastrodia elata tuber 20.88
JuvenJuvenile tuber12.09
Mother_GastroMother tuber of Gastrodia elata 12.41
Mother_JuvenMother tuber of Juvenile 8.00