Detail information of GWHGAAEX004049/evm.TU.scaffold_144.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|118431079|ref|NP_147280.2| | 4.00E-19 | ribonuclease HII [Aeropyrum pernix K1] |
| KOG | KOG2299 | 4.00E-101 | Ribonuclease HI |
| nr | gi|743818092|ref|XP_010931119.1| | 5.29E-135 | PREDICTED: ribonuclease H2 subunit A isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9SEZ6|RNH2A_ARATH | 1.00E-124 | Ribonuclease H2 subunit A |
| trEMBL | tr|M0RH10|M0RH10_MUSAM | 3.00E-133 | Ribonuclease {ECO:0000256|RuleBase:RU003515} |
| TAIR | AT2G25100 | 4.00E-101 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000154 | 1407561 | 1423459 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004049
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01351.17 | RNase_HII | 77 | 251 | 1.30E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10743 | RNASEH2A | DNA replication | map03030 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016070 | Biological Process | RNA metabolic process |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0004523 | Molecular Function | RNA-DNA hybrid ribonuclease activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 54.070 |
| SRR2545915 | Juvenile tuber | 69.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.470 |
| SRR5643514 | five period of Gastrodia elata | 56.440 | |
| SRR5643515 | five period of Gastrodia elata | 48.240 | |
| SRR5643524 | five period of Gastrodia elata | 51.260 | |
| SRR5643525 | five period of Gastrodia elata | 57.770 | |
| SRR5643528 | five period of Gastrodia elata | 45.030 | |
| SRR5643658 | five period of Gastrodia elata | 53.030 | |
| SRR5643659 | five period of Gastrodia elata | 70.480 | |
| SRR5643660 | five period of Gastrodia elata | 73.420 | |
| SRR5643661 | five period of Gastrodia elata | 78.650 | |
| SRR5643662 | five period of Gastrodia elata | 88.430 | |
| SRR5643663 | five period of Gastrodia elata | 74.720 | |
| SRR5643664 | five period of Gastrodia elata | 94.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 52.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 55.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 51.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 43.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 48.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 55.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 55.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 75.34 |
| Juven | Juvenile tuber | 70.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.40 | |
| Mother_Juven | Mother tuber of Juvenile | 36.00 |