Detail information of GWHGAAEX004055/evm.TU.scaffold_144.63


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08701.00E-37DNA polymerase epsilon, subunit D
nrgi|702474177|ref|XP_010031521.1|9.70E-52PREDICTED: DNA polymerase epsilon subunit D [Eucalyptus grandis]
Swissprottr|Q9FGJ3|NFYB2_ARATH2.00E-11Nuclear transcription factor Y subunit B-2
trEMBLtr|A0A059A9S3|A0A059A9S3_EUCGR4.00E-52Uncharacterized protein {ECO:0000313|EMBL:KCW50852.1}
TAIRAT2G274701.00E-37nuclear factor Y, subunit B11

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015415592461577940-
Transcript Sequence

Network for GWHGAAEX004055

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00808.22CBFD_NFYB_HMF50991.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YB

KEGG pathway

KO Enzyme pathway mapID
K02326POLE3 DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms54.130
SRR2545915Juvenile tuber67.040
SRP108465SRR5643513five period of Gastrodia elata125.810
SRR5643514five period of Gastrodia elata116.910
SRR5643515five period of Gastrodia elata108.380
SRR5643524five period of Gastrodia elata86.810
SRR5643525five period of Gastrodia elata77.060
SRR5643528five period of Gastrodia elata52.630
SRR5643658five period of Gastrodia elata83.020
SRR5643659five period of Gastrodia elata120.190
SRR5643660five period of Gastrodia elata156.970
SRR5643661five period of Gastrodia elata113.350
SRR5643662five period of Gastrodia elata88.760
SRR5643663five period of Gastrodia elata112.990
SRR5643664five period of Gastrodia elata131.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1117.230
SRR6049655Rhizomagastrodiae_C368-T10_good_1107.370
SRR6049656Rhizomagastrodiae_C368-T07_good_1110.990
SRR6049657Rhizomagastrodiae_C368-T07_good_1110.560
SRR6049658Rhizomagastrodiae_C368-T04_good_1112.140
SRR6049659Rhizomagastrodiae_C368-T04_good_1116.300
SRR6049660Rhizomagastrodiae_C368-T01_good_1102.810
SRR6049661Rhizomagastrodiae_C368-T04_good_1103.790
SRR6049662Rhizomagastrodiae_C368-T01_good_192.160
SRR6049663Rhizomagastrodiae_C368-T01_good_1103.790
SRR6049664Rhizomagastrodiae_C368-T10_good_1136.880
SRR6049665Rhizomagastrodiae_C368-T10_good_1136.880
SRP279888GastroGastrodia elata tuber 183.90
JuvenJuvenile tuber252.70
Mother_GastroMother tuber of Gastrodia elata 140.06
Mother_JuvenMother tuber of Juvenile 156.70