Gene detail

Detail information of GWHGAAEX004060/evm.TU.scaffold_144.70

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2692	1.00E-117	Sialyltransferase
nr	gi\|743863060\|ref\|XP_010943704.1\|	5.12E-170	PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like [Elaeis guineensis]
trEMBL	tr\|V5JD60\|V5JD60_9ASPA	5.00E-159	Sialyltransferase like protein 1 {ECO:0000313\|EMBL:AGI60279.1}
TAIR	AT1G08280	1.00E-117	Glycosyltransferase family 29 (sialyltransferase) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000154	1773220	1775035	+

Transcript Sequence
>GWHTAAEX004060 CTTATTAATTTATTTGTTTAACAAATCTGTTAACAAATTTATCATATTAAGAAAAAGAAATTTGTATAAGAATTATTTTAGTTGAGAAATTTATTAGTGCAGCATAAAAACATATCATTTTGGTTAGGTTTACGAGATTACTTTCTTCGCTTCTTTGCATCAGCCGGAAAGCTAGGTCTTCCGTCCTGGATAATTTGAGGGATGGAAGATGCTCCCCTGAACGCCATGTCGGGCTAACAGCAGCATAGATTGATGAGGAGCTGCTGTTCATTCTCTCTCCGGCTGCCATTCAACCTTCTTCCACTCCTCGCTATCCTCACTCTCCTGACTTGCCAGGCCTCCGTCCGCCGTCTCACCCTCTCCGAATCCCCTCTATCCGACGTATCCACCGCCGCGCTGAGCAAATCTAACGCCACCGTACTCCTCTTCCACCTCGCCTCAAAGGATCTTGCGGAGGCAGGCCTCAGGAAGGACGTTCACGATCTTTTAGAAGGCAACATACCCGCCTCCGCCGTTTTGCGCCACCTCCCCGCCGGCGGCGGACAATGGCGGTCGAATTCGCGTGTGCAAATAGGCACACGTTTTCCTCTGAACCACGCCGGGATCTTCTCGGAGCTCCGCCGATCCCTTCGAGATTGGTGGAGGAACCGTCGCTTTCAGCCGGAAATCATGTTGGAGCTACCCGAACTCGTGAAGCGCCCACTCGACCGGCATCATGGCCGCTCCTTTTCCGCCCGTCGGTACGCTTCCTGCGCCGTGGTCGGAAATAGCGGAATCCTCCTCAACGGTGGCCACGGCAGCCTCATCGACGGCCACGAGCTTGTGATACGGCTCAATAACGCCCGCACGCACGGCTACCAACGAGATGTCGGATCCAGGACGGGGCTCTCCTTTGTGAACAGCAACATCCTCCATCTCTGCGCCAGGCGGCCCGGCTGTTTCTGTCATCCCTATGGCCAGGGCGTTCCCATCATCATGTACATTTGCCAGGCCGCCCACTTTCTCGACTACACAATCTGCAACTCCTCTTCCTTTTTCAGTTCCCCTCTGCTGATAACCGACATCCGGTTCGACATGCTGTGCGGTAAAATTGTCAAGTTTTATTCCCTGAAGAGGTTCGGGGAGGTCACGGGCAGGCCTCTCCAAGATTGGGCTAAGATTCATGATGAGAAGATGTTCCATTACTCCTCTGGGTTGCAGGCGCTCATGCTGGCACTTGGTATATGCAACCGGGTTAGCGTTTTTGGGTTCGGCAAATCTTCGGAAGCAAAGCATCATTACCACACAAACCAGAAGGCGGAGCTCGACCTGCACGACTACGGTGCAGAGTACGCCTTCTATCAAGACCTTGTTGACAGGCCGCAGACAATACCATTCCTCAAGGATTCTGGGTTTAAAGTTCCACCTCTTGTTTTCTACCAATAGGGATCCAAACTTGGATCGATTGAAGCGTTTTATGATGGGAATTCAGTATCTGCCAGATTAGGATTCGCCACCAACCAGATTTGTCTATTTTGTTATCTGTTTTCTATTTCAACTAAAGGCGCTATCACGTGTGAATCCTCGAGCTACTAATCAGTTTTGTTTAATCGAATGTACAATTTGTTCTTTCTCTTATGTAAGACAATGGGAGAGGAAGAAATGAATCAAAACTCTTAGGGCCTATTTGGTTGGACGTTACTAATTGAGGGCCGGCTAATCTGGTTGGACATTGCGTGCAAAATTATTAAAATAGCATGCTATCCAAATACTTGTGCCATTATATTAGATTGTATTGGTAGGTGCTTGCCATATATGTAATGTTTTTCAAGTAATA

Network for GWHGAAEX004060

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00777.17	Glyco_transf_29	158	219	2.60E-21
PF00777.17	Glyco_transf_29	299	368	3.40E-10

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT29

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006486	Biological Process	protein glycosylation
GO:0008373	Molecular Function	sialyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.770
SRP064423	SRR2545915	Juvenile tuber	4.750
SRP108465	SRR5643513	five period of Gastrodia elata	8.960
	SRR5643514	five period of Gastrodia elata	8.030
	SRR5643515	five period of Gastrodia elata	9.950
	SRR5643524	five period of Gastrodia elata	7.590
	SRR5643525	five period of Gastrodia elata	9.380
	SRR5643528	five period of Gastrodia elata	8.950
	SRR5643658	five period of Gastrodia elata	10.510
	SRR5643659	five period of Gastrodia elata	9.240
	SRR5643660	five period of Gastrodia elata	11.230
	SRR5643661	five period of Gastrodia elata	10.480
	SRR5643662	five period of Gastrodia elata	10.620
	SRR5643663	five period of Gastrodia elata	11.110
	SRR5643664	five period of Gastrodia elata	7.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.950
SRP279888	Gastro	Gastrodia elata tuber	7.08
	Juven	Juvenile tuber	5.06
	Mother_Gastro	Mother tuber of Gastrodia elata	4.24
	Mother_Juven	Mother tuber of Juvenile	3.83