Gene detail

Detail information of GWHGAAEX004072/evm.TU.scaffold_144.88

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4197	FOG: PPR repeat
nr	gi\|672126243\|ref\|XP_008786564.1\|	PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Phoenix dactylifera]
Swissprot	tr\|Q9C9I3\|PP115_ARATH	Pentatricopeptide repeat-containing protein At1g71460, chloroplastic (Precursor)
trEMBL	tr\|M0SF82\|M0SF82_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P16660_001}
TAIR	AT1G71460	Pentatricopeptide repeat (PPR-like) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000154	2628117	2631109	-

Transcript Sequence
>GWHTAAEX004072 AAAAATGTTATAGATCTCTGATCTGCTAGCTTCGCATCGTACGTCGAAGTGTGGTTCTTCTCTCTGCGCATCATCCTCAGCTCCGCATCGTCCTCCCTGTAAGAGACGAAGACGGCGCAGAGTCCTCCGCCGAAGTGTAACCGATGTCCTTCAGGTTCTTCTCCCCCGCAGCAATTAACTTTTTCCTAGACCTAATCGCAGTTCCTCCCAATTGCAGTTACCAATCCGAACCCGATGGAGGCAGTGATGAACGAAGACTAAGCCTTCCTAGATCGGGCAGTTTGTATTCTAGTTCTCTGAGTTAACATTTGAGATGCCGCTATTCTAGTTCTAGTTCTATTCTAGTTCTAGTTCACTGAGTTAGGGTTTTGTTTTGAGATGCCGATTACTTCCATAGACCACAAAACCCTTTTCCTCTGGACCTCCGCTGCCCCAATCGCATCCCCCTTCTCTCCCAAAACCCCATCTTTCACCAAATTTCTCCCTCCGCATGCGGTGTTCCCTGAATCCCTCCTCTCCATTCGCTCCAAAAACCCTAAATCCATTTACAGAGATATTAAGCATCTTTCCCGCCAAGGAAATCATCGGGACGCCCTCGCTATCCTCGATTACCTCGACGACAGCGGCATTCCCGTCGACTCCACAGCCTTCTCTGCTCTCCTCTCTGCTGCCTCGCAACTTAAATCTCTCTCTTTTGCCCGTCAGATCCATCTCCACATCCGTTTCAATGGCCTCCACAGGAACGAATTCCTCCTCTCCAAGCTCGCCCAAACTTACGCCGCTTGCGGCTCGCAGAAACTCTCCGAGCGCGCCTTTTCTCAGCTCTCGCTCTCCACAGCCTATCCCTGGAATGCGGTCCTTAGAGGCAGCCTTGCCTGCGGCTCAAGATGCGATTTTGGGCCACTTTCTGTTTTCTCGGCCATGAGAGAGGCCGGAGTCGAGGCCAATGAGTATACCTTCTCTTCTCTCCTGAAGAGCTTCGCCGGCTCCCCGGGAGAAGGCATGAAAGCCCATGCTCTTTTAGTTAAGATTCATTTTGCAGGTGCCCCGTTGCTTCTCAGGACGGGCTTGGTTGATATGTACTTCAAGTGCGGCAGGGTTAGGATGGCTGTCAAGCTGTTTGACGAAATTCTTGAAAAGGATGTTGTCTCATGGGGAACTATAATTGCAGGGTTTGCTCACAAGAAGCTTCGCCAGGAAGCGTTGGCGTGTTTCAGGCTGATGGGAAACGAGGGAATTCTCCCGAATTCTGTTGTGCTGGTGTCGGTTCTTCCAGTTATTGGAGAGCTTTCGATGCTGCACTTGGGCAGGGAGGCCCATTGCTATGCCCTGAAGCGGTTCCGAAACTATGCTAAGATGGTAACGATTCATTCGGGGTTGATCGACATGTATTGCAAATGCAAGGATCTGGTTTTGGCGAGGAGGGTCTTTAATGGCTCTTCGGAAAGGAATGAAGTGTCTTGGACGGCACTTATGTCGGGATATGCATCAAACAACAGGCTTGGGCAGGCGTTGAGGACAATCGTTTGGATGCAACAAGAAGGGGTGAAGCCAGATGTTGTCTCGATTGCTACGATACTACCCGTTTGTGCAAAGTTGAAGGCTTGGAGGCAAGGGCAGCAGGTTCATGGCTATTGTTTGAAGAACCGGTTCCTGCCAAATGTGTCGGTAGAAACTTCACTCATAGTCATGTACTCAGAATGCGGAAAGATAGCTTCTTGTTGTAGAGTTTTTGATGGAATGCAGTGGAAGAATGTGGTAGCTTGGACTGCAATGTTAGAATCATACTTGAGAATTAGCAACCCAGCTTGTGCCCTTGTGGTATTTAGATTAATGCTGGCAACAAATCGAAAACCAGATGCTGTAATTATAGGCAGGGTTTTGCGGGCTAGTGGGGAACTGAGAGCTTTGAAGCTTGGAAAGGAGATACATGCTCAAGTTTACAAGCTGAACTTAGAAATGATTCCATTAATTGTTGGTGAGATTGTGTTCTTATATGGAAGGTGCAAAGACATTAAGAAAGCTCAAATGTTGTTTGATAGGGATCAGAACAAAGGTCCGTTCACCTGGAATGCAGTAATAAAAGCCTATGGTCACAACAAGTTGTATAGAGAAGCACTGAATATATTTGAGCTGATGCTTTCAGATGGTTATGTTCCAAATCATTATACTTTTAATATTGTCTTATCAGTATGTGAGGAAGCCGGGTTGGCTGATGAGGCTCTCAAGGTATTTTTAGGCATGATTCAGAAGTATAAACTGACTTCAAGGATTGAGCAGCTTGATTGTATGATTGGCCTCCTTAATCGAGTTGGCCGGATCGATGAAGCACTGTGGTTTGCACAATTGAGATTTAGATTGGTATGAATGAGCTGTGCACAATGTTAATTAATGGCATCAATGCAACATATCAACACAAAACATAAAACAAAAAAAATCTCTTTCATGGAAGACATCAATGGCATCGTTGAACTAGAGAGATTACACAACTGCATTAGGATTTTATTTTCTTAATCCTCCTTGCCGCAGCAGTTGCAGTTGTGGGATTCTTTAACTTCAAAGTCATGCAAGGCATTTTGGAACGATCCCACTATGCTCTGAGAACTCCAGAGAGCTACAGAGAGTGATAATGGGGGGGGATCAAATTGGTATAACTTAAAATTTGTTGAATTCTTGCAATGTTTAAGGACCTCATTAAATATGAAAAAAAAATGAAAGTTCACGATATGTTTGCTAAATAAATTTGTGGAATTCTGCATATATGCAAATGATTTGCAACTTTTTTATAAATACAATATCTGTTTATATATATACGGTTTAGTGTTTAGGGTATATATATATATAGATATGTTTAAGCAAATATTGCATTTATACAAAAATTGTAAATCATTTACATATAGTGCAGATGCTGAGATTCCATTCCATTTATACACATTGAGTATGAAAATTAACAATTTATTTGTACAAAAGATAATTAACATGCAAGATATTAT

Network for GWHGAAEX004072

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	231	255	0.0024
PF01535.19	PPR	257	287	0.033
PF13041.5	PPR_2	358	405	2.60E-08
PF13041.5	PPR_2	562	606	7.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.090
SRP064423	SRR2545915	Juvenile tuber	10.200
SRP108465	SRR5643513	five period of Gastrodia elata	8.090
	SRR5643514	five period of Gastrodia elata	8.230
	SRR5643515	five period of Gastrodia elata	8.440
	SRR5643524	five period of Gastrodia elata	7.800
	SRR5643525	five period of Gastrodia elata	11.240
	SRR5643528	five period of Gastrodia elata	8.560
	SRR5643658	five period of Gastrodia elata	8.870
	SRR5643659	five period of Gastrodia elata	12.930
	SRR5643660	five period of Gastrodia elata	12.470
	SRR5643661	five period of Gastrodia elata	12.230
	SRR5643662	five period of Gastrodia elata	14.440
	SRR5643663	five period of Gastrodia elata	14.910
	SRR5643664	five period of Gastrodia elata	12.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.200
SRP279888	Gastro	Gastrodia elata tuber	18.50
	Juven	Juvenile tuber	25.66
	Mother_Gastro	Mother tuber of Gastrodia elata	10.75
	Mother_Juven	Mother tuber of Juvenile	16.08