Detail information of GWHGAAEX004074/evm.TU.scaffold_144.90


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|294054720|ref|YP_003548378.1|5.00E-39ATP-dependent helicase HrpA [Coraliomargarita akajimensis DSM 45221]
KOGKOG09223.00E-79DEAH-box RNA helicase
nrgi|502109761|ref|XP_004493721.1|1.78E-85PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase prp22-like [Cicer arietinum]
Swissprottr|Q38953|DHX8_ARATH1.00E-53Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|A0A078HA81|A0A078HA81_BRANA1.00E-83BnaC03g56670D protein {ECO:0000313|EMBL:CDY34567.1}
TAIRAT1G263703.00E-79RNA helicase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015426652732678537+
Transcript Sequence

Network for GWHGAAEX004074

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13401.5AAA_22962391.50E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12818DHX8, PRP22 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.100
SRR2545915Juvenile tuber19.530
SRP108465SRR5643513five period of Gastrodia elata11.810
SRR5643514five period of Gastrodia elata12.800
SRR5643515five period of Gastrodia elata15.660
SRR5643524five period of Gastrodia elata13.880
SRR5643525five period of Gastrodia elata14.120
SRR5643528five period of Gastrodia elata14.330
SRR5643658five period of Gastrodia elata17.030
SRR5643659five period of Gastrodia elata13.340
SRR5643660five period of Gastrodia elata12.540
SRR5643661five period of Gastrodia elata9.620
SRR5643662five period of Gastrodia elata10.470
SRR5643663five period of Gastrodia elata13.860
SRR5643664five period of Gastrodia elata8.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.330
SRR6049655Rhizomagastrodiae_C368-T10_good_16.140
SRR6049656Rhizomagastrodiae_C368-T07_good_122.640
SRR6049657Rhizomagastrodiae_C368-T07_good_126.030
SRR6049658Rhizomagastrodiae_C368-T04_good_137.420
SRR6049659Rhizomagastrodiae_C368-T04_good_144.380
SRR6049660Rhizomagastrodiae_C368-T01_good_137.110
SRR6049661Rhizomagastrodiae_C368-T04_good_138.640
SRR6049662Rhizomagastrodiae_C368-T01_good_122.620
SRR6049663Rhizomagastrodiae_C368-T01_good_127.930
SRR6049664Rhizomagastrodiae_C368-T10_good_112.840
SRR6049665Rhizomagastrodiae_C368-T10_good_112.840
SRP279888GastroGastrodia elata tuber 11.02
JuvenJuvenile tuber6.77
Mother_GastroMother tuber of Gastrodia elata 6.11
Mother_JuvenMother tuber of Juvenile 5.21