Detail information of GWHGAAEX004076/evm.TU.scaffold_145.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|408420936|ref|YP_006762350.1|1.00E-1950S ribosomal protein L7/12 RplL [Desulfobacula toluolica Tol2]
KOGKOG17152.00E-45Mitochondrial/chloroplast ribosomal protein L12
nrgi|719996047|ref|XP_010254700.1|1.42E-59PREDICTED: 54S ribosomal protein L12, mitochondrial [Nelumbo nucifera]
Swissprottr|Q6B905|RK12_GRATL5.00E-2250S ribosomal protein L12, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00368}
trEMBLtr|M0U992|M0U992_MUSAM3.00E-56Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP14830_001}
TAIRAT4G364202.00E-45Ribosomal protein L12 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001445724058158-
Transcript Sequence

Network for GWHGAAEX004076

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16320.4Ribosomal_L12_N39791.00E-08
PF00542.18Ribosomal_L121091742.30E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02935RP-L7, MRPL12, rplL Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.580
SRR2545915Juvenile tuber11.910
SRP108465SRR5643513five period of Gastrodia elata24.630
SRR5643514five period of Gastrodia elata24.960
SRR5643515five period of Gastrodia elata22.380
SRR5643524five period of Gastrodia elata20.890
SRR5643525five period of Gastrodia elata23.120
SRR5643528five period of Gastrodia elata23.600
SRR5643658five period of Gastrodia elata25.060
SRR5643659five period of Gastrodia elata24.400
SRR5643660five period of Gastrodia elata22.110
SRR5643661five period of Gastrodia elata22.920
SRR5643662five period of Gastrodia elata18.330
SRR5643663five period of Gastrodia elata19.030
SRR5643664five period of Gastrodia elata22.360
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.360
SRR6049655Rhizomagastrodiae_C368-T10_good_137.300
SRR6049656Rhizomagastrodiae_C368-T07_good_123.870
SRR6049657Rhizomagastrodiae_C368-T07_good_120.170
SRR6049658Rhizomagastrodiae_C368-T04_good_117.620
SRR6049659Rhizomagastrodiae_C368-T04_good_118.500
SRR6049660Rhizomagastrodiae_C368-T01_good_122.550
SRR6049661Rhizomagastrodiae_C368-T04_good_120.130
SRR6049662Rhizomagastrodiae_C368-T01_good_116.790
SRR6049663Rhizomagastrodiae_C368-T01_good_121.380
SRR6049664Rhizomagastrodiae_C368-T10_good_118.750
SRR6049665Rhizomagastrodiae_C368-T10_good_118.750
SRP279888GastroGastrodia elata tuber 19.35
JuvenJuvenile tuber22.86
Mother_GastroMother tuber of Gastrodia elata 17.53
Mother_JuvenMother tuber of Juvenile 15.80