Detail information of GWHGAAEX004083/evm.TU.scaffold_145.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284030079|ref|YP_003380010.1| | 8.00E-50 | beta-galactosidase [Kribbella flavida DSM 17836] |
| KOG | KOG0496 | 0 | Beta-galactosidase |
| nr | gi|743774652|ref|XP_010917686.1| | 0 | PREDICTED: beta-galactosidase 5-like [Elaeis guineensis] |
| Swissprot | tr|Q10RB4|BGAL5_ORYSJ | 0 | Beta-galactosidase 5 (Precursor) |
| trEMBL | tr|M0U2C0|M0U2C0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P21610_001} |
| TAIR | AT4G36360 | 0 | beta-galactosidase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000144 | 633996 | 657895 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004083
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01301.18 | Glyco_hydro_35 | 29 | 333 | 1.30E-118 |
| PF02140.17 | Gal_Lectin | 757 | 834 | 3.40E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0030246 | Molecular Function | carbohydrate binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 84.510 |
| SRR2545915 | Juvenile tuber | 109.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 82.430 |
| SRR5643514 | five period of Gastrodia elata | 69.280 | |
| SRR5643515 | five period of Gastrodia elata | 94.580 | |
| SRR5643524 | five period of Gastrodia elata | 80.380 | |
| SRR5643525 | five period of Gastrodia elata | 101.550 | |
| SRR5643528 | five period of Gastrodia elata | 50.920 | |
| SRR5643658 | five period of Gastrodia elata | 136.560 | |
| SRR5643659 | five period of Gastrodia elata | 107.910 | |
| SRR5643660 | five period of Gastrodia elata | 92.220 | |
| SRR5643661 | five period of Gastrodia elata | 83.160 | |
| SRR5643662 | five period of Gastrodia elata | 69.560 | |
| SRR5643663 | five period of Gastrodia elata | 88.230 | |
| SRR5643664 | five period of Gastrodia elata | 42.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 54.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 58.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 48.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 38.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 54.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 67.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 77.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 62.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 62.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.21 |
| Juven | Juvenile tuber | 57.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 59.92 | |
| Mother_Juven | Mother tuber of Juvenile | 15.17 |