Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|347524015\|ref\|YP_004781585.1\|	2.00E-28	phosphodiesterase [Pyrolobus fumarii 1A]
KOG	KOG3325	2.00E-123	Membrane coat complex Retromer, subunit VPS29/PEP11
nr	gi\|720022997\|ref\|XP_010263203.1\|	3.17E-130	PREDICTED: vacuolar protein sorting-associated protein 29 [Nelumbo nucifera]
Swissprot	tr\|Q9STT2\|VPS29_ARATH	7.00E-124	Vacuolar protein sorting-associated protein 29
trEMBL	tr\|A2X377\|A2X377_ORYSI	6.00E-130	Putative uncharacterized protein {ECO:0000313\|EMBL:EAY85287.1}
TAIR	AT3G47810	2.00E-123	Calcineurin-like metallo-phosphoesterase superfamily protein

Scaffold	Start	End	Strand
GWHAAEX00000144	754607	791060	-

Transcript Sequence
>GWHTAAEX004084 GCCCTTTTCTATTTCCATCGAGAACCCTGCGTCCTTCTATCTCCTAAATCATACGATACGCGGTTTAAGGCTCCTCTGCCTCACATCCGATTTGAGCACTTAACTGAATTTGGATTTACGACGCCAACTCACTGGTTCGTTTCGAAGATTTAAAGATTTGTTCAACTAAATCGCTGCTTAAATCCTGTCACCAAACAATCCGTTGTATTACAAGTATGGTGCTAGTTCTCGCCCTTGGCGATCTCCACATTCCTCATAGGGCCGCAGATTTGCCAACAAAATTTAAGTCCATGCTTGTTCCTGGAAAGATCCAGCACATTTTATGCACCGGCAATCTATGCATCAAGGAGATTCATGATTACTTGAAAAGCCTTTGCCCTGACTTACATGTTTCAAGAGGAGAATATGATGAAGATGCTCGGTACCCAGAGACCAAAACTCTTACAATTGGCCAATTTAAGCTTGGGCTATGTCATGGACACCAGGTTATTCCGTGGGGCGATTTGGATTCATTGGCAATGCTCCAAAGGCAACTAGACGTGGACATTCTCGTCACGGGCCACACGCACCAATTCAAGGCTTATAAGCACGAGGGCGGCGTCGTCATCAATCCCGGTTCCGCTACTGGCGCCTACAGCAGTGTCACATACGACGTGAATCCCAGTTTCGTTCTCATGGACATTGACGGCCTCCGCGTCGTTGTGTACGTTTATGAGCTCATTGATGGCGAGGTCAAGGTCGACAAGATCGACTTCAAGAAGACCGCCCCCGCACAATCCTCTCCATGAATGGCAAGTCTCTTTTCTGCTCTTTCAAAGTATATTTGCAAGTGTATTAATCAATGTTTGTATTCATGTAGTTGAAATGCCTCACCCAAAATATATATTATAAGAATTAATTTTTATCAAACTTTATGTATAAATTTTATTGATTTGGATGTTGCATCTGCCAAAAGTTTGTAGTAGAACTTAGTAATAATATACGAATT

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K18467	VPS29	Endocytosis	map04144

GO term	Ontology	Name
GO:0042147	Biological Process	retrograde transport, endosome to Golgi
GO:0030904	Cellular Component	retromer complex

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.880
SRP064423	SRR2545915	Juvenile tuber	34.920
SRP108465	SRR5643513	five period of Gastrodia elata	41.980
	SRR5643514	five period of Gastrodia elata	44.290
	SRR5643515	five period of Gastrodia elata	46.950
	SRR5643524	five period of Gastrodia elata	46.580
	SRR5643525	five period of Gastrodia elata	51.800
	SRR5643528	five period of Gastrodia elata	62.060
	SRR5643658	five period of Gastrodia elata	67.870
	SRR5643659	five period of Gastrodia elata	42.350
	SRR5643660	five period of Gastrodia elata	45.610
	SRR5643661	five period of Gastrodia elata	45.700
	SRR5643662	five period of Gastrodia elata	59.470
	SRR5643663	five period of Gastrodia elata	61.360
	SRR5643664	five period of Gastrodia elata	58.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	78.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	47.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.600
SRP279888	Gastro	Gastrodia elata tuber	71.51
	Juven	Juvenile tuber	46.62
	Mother_Gastro	Mother tuber of Gastrodia elata	45.88
	Mother_Juven	Mother tuber of Juvenile	31.96