Detail information of GWHGAAEX004090/evm.TU.scaffold_145.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|158522375|ref|YP_001530245.1| | 4.00E-08 | CaCA family Na(+)/Ca(+) antiporter [Desulfococcus oleovorans Hxd3] |
| KOG | KOG2399 | 1.00E-156 | K+-dependent Na+:Ca2+ antiporter |
| nr | gi|743775256|ref|XP_010918006.1| | 0 | PREDICTED: cation/calcium exchanger 1-like [Elaeis guineensis] |
| Swissprot | tr|Q9FKP1|CCX1_ARATH | 3.00E-157 | Cation/calcium exchanger 1 |
| trEMBL | tr|F6HMN1|F6HMN1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56013.1} |
| TAIR | AT5G17860 | 1.00E-156 | calcium exchanger 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000144 | 1653183 | 1656018 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004090
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01699.23 | Na_Ca_ex | 116 | 255 | 8.30E-25 |
| PF01699.23 | Na_Ca_ex | 417 | 569 | 2.70E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.040 |
| SRR2545915 | Juvenile tuber | 0.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.420 |
| SRR5643514 | five period of Gastrodia elata | 4.270 | |
| SRR5643515 | five period of Gastrodia elata | 1.030 | |
| SRR5643524 | five period of Gastrodia elata | 4.530 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.040 | |
| SRR5643661 | five period of Gastrodia elata | 0.040 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.08 |