Detail information of GWHGAAEX004092/evm.TU.scaffold_145.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1986 | 0 | Vesicle coat complex COPII, subunit SEC23 |
| nr | gi|672177885|ref|XP_008809053.1| | 0 | PREDICTED: protein transport protein sec23-1 [Phoenix dactylifera] |
| trEMBL | tr|F6HDY2|F6HDY2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB50497.1} |
| TAIR | AT5G43670 | 0 | Sec23/Sec24 protein transport family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000144 | 1984665 | 1993467 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004092
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04810.14 | zf-Sec23_Sec24 | 53 | 91 | 3.70E-12 |
| PF04811.14 | Sec23_trunk | 164 | 418 | 9.80E-46 |
| PF08033.11 | Sec23_BS | 432 | 533 | 2.10E-24 |
| PF04815.14 | Sec23_helical | 546 | 644 | 6.40E-21 |
| PF00626.21 | Gelsolin | 661 | 743 | 8.90E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14006 | SEC23 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0006888 | Biological Process | ER to Golgi vesicle-mediated transport |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0030127 | Cellular Component | COPII vesicle coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.290 |
| SRR2545915 | Juvenile tuber | 10.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.870 |
| SRR5643514 | five period of Gastrodia elata | 11.860 | |
| SRR5643515 | five period of Gastrodia elata | 12.910 | |
| SRR5643524 | five period of Gastrodia elata | 11.840 | |
| SRR5643525 | five period of Gastrodia elata | 18.320 | |
| SRR5643528 | five period of Gastrodia elata | 16.910 | |
| SRR5643658 | five period of Gastrodia elata | 17.460 | |
| SRR5643659 | five period of Gastrodia elata | 16.140 | |
| SRR5643660 | five period of Gastrodia elata | 16.980 | |
| SRR5643661 | five period of Gastrodia elata | 15.140 | |
| SRR5643662 | five period of Gastrodia elata | 16.750 | |
| SRR5643663 | five period of Gastrodia elata | 15.320 | |
| SRR5643664 | five period of Gastrodia elata | 13.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.78 |
| Juven | Juvenile tuber | 11.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.09 | |
| Mother_Juven | Mother tuber of Juvenile | 10.25 |