Detail information of GWHGAAEX004102/evm.TU.scaffold_146.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|108762272|ref|YP_629357.1|5.00E-71ABC transporter permease [Myxococcus xanthus DK 1622]
KOGKOG00550Multidrug/pheromone exporter, ABC superfamily
nrgi|743757723|ref|XP_010923337.1|0PREDICTED: ABC transporter B family member 11-like [Elaeis guineensis]
Swissprottr|Q9M0M2|AB9B_ARATH0ABC transporter B family member 9
trEMBLtr|W9R692|W9R692_9ROSA0ABC transporter B family member 9 {ECO:0000313|EMBL:EXB58298.1}
trEMBLtr|W9R692|W9R692_9ROSA3.00E-89ABC transporter B family member 9 {ECO:0000313|EMBL:EXB58298.1}
TAIRAT4G180500P-glycoprotein 9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001519061897991+
Transcript Sequence

Network for GWHGAAEX004102

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.22ABC_membrane343071.60E-62
PF00005.26ABC_tran3764731.70E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05658ABCB1, CD243 ABC transporters map02010
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
GO:0016887Molecular FunctionATPase activity
GO:0005524Molecular FunctionATP binding
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.750
SRR2545915Juvenile tuber0.170
SRP108465SRR5643513five period of Gastrodia elata15.400
SRR5643514five period of Gastrodia elata15.170
SRR5643515five period of Gastrodia elata1.990
SRR5643524five period of Gastrodia elata4.990
SRR5643525five period of Gastrodia elata7.220
SRR5643528five period of Gastrodia elata7.210
SRR5643658five period of Gastrodia elata8.100
SRR5643659five period of Gastrodia elata0.220
SRR5643660five period of Gastrodia elata0.140
SRR5643661five period of Gastrodia elata0.190
SRR5643662five period of Gastrodia elata0.330
SRR5643663five period of Gastrodia elata0.360
SRR5643664five period of Gastrodia elata0.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_156.830
SRR6049655Rhizomagastrodiae_C368-T10_good_1111.900
SRR6049656Rhizomagastrodiae_C368-T07_good_1118.010
SRR6049657Rhizomagastrodiae_C368-T07_good_1102.950
SRR6049658Rhizomagastrodiae_C368-T04_good_14.290
SRR6049659Rhizomagastrodiae_C368-T04_good_10.840
SRR6049660Rhizomagastrodiae_C368-T01_good_157.100
SRR6049661Rhizomagastrodiae_C368-T04_good_132.820
SRR6049662Rhizomagastrodiae_C368-T01_good_166.930
SRR6049663Rhizomagastrodiae_C368-T01_good_14.950
SRR6049664Rhizomagastrodiae_C368-T10_good_179.150
SRR6049665Rhizomagastrodiae_C368-T10_good_179.150
SRP279888GastroGastrodia elata tuber 0.30
JuvenJuvenile tuber180.84
Mother_GastroMother tuber of Gastrodia elata 1.55
Mother_JuvenMother tuber of Juvenile 8.91