Detail information of GWHGAAEX004103/evm.TU.scaffold_146.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|108759375|ref|YP_633320.1|6.00E-16ABC transporter permease [Myxococcus xanthus DK 1622]
KOGKOG00551.00E-133Multidrug/pheromone exporter, ABC superfamily
nrgi|695076216|ref|XP_009385386.1|5.56E-157PREDICTED: ABC transporter B family member 4-like isoform X2 [Musa acuminata subsp. malaccensis]
Swissprottr|O80725|AB4B_ARATH3.00E-134ABC transporter B family member 4
trEMBLtr|F6HZG2|F6HZG2_VITVI6.00E-145Putative uncharacterized protein {ECO:0000313|EMBL:CCB60077.1}
TAIRAT2G470001.00E-133ATP binding cassette subfamily B4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001519835099729+
Transcript Sequence

Network for GWHGAAEX004103

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.22ABC_membrane1193791.90E-53
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05658ABCB1, CD243 ABC transporters map02010
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
GO:0005524Molecular FunctionATP binding
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.880
SRR2545915Juvenile tuber3.500
SRP108465SRR5643513five period of Gastrodia elata32.150
SRR5643514five period of Gastrodia elata28.090
SRR5643515five period of Gastrodia elata10.850
SRR5643524five period of Gastrodia elata10.840
SRR5643525five period of Gastrodia elata13.400
SRR5643528five period of Gastrodia elata11.550
SRR5643658five period of Gastrodia elata14.600
SRR5643659five period of Gastrodia elata8.490
SRR5643660five period of Gastrodia elata7.840
SRR5643661five period of Gastrodia elata7.720
SRR5643662five period of Gastrodia elata6.300
SRR5643663five period of Gastrodia elata9.440
SRR5643664five period of Gastrodia elata10.710
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_187.990
SRR6049655Rhizomagastrodiae_C368-T10_good_1173.230
SRR6049656Rhizomagastrodiae_C368-T07_good_1192.860
SRR6049657Rhizomagastrodiae_C368-T07_good_1183.490
SRR6049658Rhizomagastrodiae_C368-T04_good_112.040
SRR6049659Rhizomagastrodiae_C368-T04_good_110.810
SRR6049660Rhizomagastrodiae_C368-T01_good_193.140
SRR6049661Rhizomagastrodiae_C368-T04_good_167.060
SRR6049662Rhizomagastrodiae_C368-T01_good_1103.900
SRR6049663Rhizomagastrodiae_C368-T01_good_115.160
SRR6049664Rhizomagastrodiae_C368-T10_good_1125.640
SRR6049665Rhizomagastrodiae_C368-T10_good_1125.640
SRP279888GastroGastrodia elata tuber 4.98
JuvenJuvenile tuber227.93
Mother_GastroMother tuber of Gastrodia elata 12.01
Mother_JuvenMother tuber of Juvenile 22.93