Detail information of GWHGAAEX004111/evm.TU.scaffold_146.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG46600Protein Mei2, essential for commitment to meiosis, and related proteins
nrgi|672107610|ref|XP_008779504.1|0PREDICTED: protein MEI2-like 2 [Phoenix dactylifera]
Swissprottr|Q6ZI17|OML2_ORYSJ0Protein MEI2-like 2
trEMBLtr|F6HMG6|F6HMG6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55755.1}
TAIRAT1G294000MEI2-like protein 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151223047233549+
Transcript Sequence

Network for GWHGAAEX004111

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_12072717.60E-11
PF00076.21RRM_12923572.80E-12
PF04059.11RRM_27078033.10E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms117.760
SRR2545915Juvenile tuber81.000
SRP108465SRR5643513five period of Gastrodia elata65.940
SRR5643514five period of Gastrodia elata71.570
SRR5643515five period of Gastrodia elata61.250
SRR5643524five period of Gastrodia elata65.570
SRR5643525five period of Gastrodia elata172.330
SRR5643528five period of Gastrodia elata146.180
SRR5643658five period of Gastrodia elata136.910
SRR5643659five period of Gastrodia elata58.590
SRR5643660five period of Gastrodia elata60.950
SRR5643661five period of Gastrodia elata47.430
SRR5643662five period of Gastrodia elata45.390
SRR5643663five period of Gastrodia elata53.670
SRR5643664five period of Gastrodia elata61.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_176.560
SRR6049655Rhizomagastrodiae_C368-T10_good_168.970
SRR6049656Rhizomagastrodiae_C368-T07_good_174.600
SRR6049657Rhizomagastrodiae_C368-T07_good_1107.070
SRR6049658Rhizomagastrodiae_C368-T04_good_1110.520
SRR6049659Rhizomagastrodiae_C368-T04_good_1124.880
SRR6049660Rhizomagastrodiae_C368-T01_good_197.930
SRR6049661Rhizomagastrodiae_C368-T04_good_1108.410
SRR6049662Rhizomagastrodiae_C368-T01_good_158.850
SRR6049663Rhizomagastrodiae_C368-T01_good_167.900
SRR6049664Rhizomagastrodiae_C368-T10_good_152.050
SRR6049665Rhizomagastrodiae_C368-T10_good_152.050
SRP279888GastroGastrodia elata tuber 86.67
JuvenJuvenile tuber92.67
Mother_GastroMother tuber of Gastrodia elata 251.18
Mother_JuvenMother tuber of Juvenile 243.71