Detail information of GWHGAAEX004114/evm.TU.scaffold_146.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434386186|ref|YP_007096797.1|4.00E-09WD40 repeat-containing protein [Chamaesiphon minutus PCC 6605]
KOGKOG38812.00E-135Uncharacterized conserved protein
nrgi|743824521|ref|XP_010932800.1|0PREDICTED: WD repeat-containing protein DDB_G0290555 [Elaeis guineensis]
trEMBLtr|I1GU49|I1GU49_BRADI9.00E-175Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G26700.1}
TAIRAT1G293202.00E-135Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151292729303362+
Transcript Sequence

Network for GWHGAAEX004114

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.510
SRR2545915Juvenile tuber26.750
SRP108465SRR5643513five period of Gastrodia elata45.400
SRR5643514five period of Gastrodia elata43.450
SRR5643515five period of Gastrodia elata44.530
SRR5643524five period of Gastrodia elata42.900
SRR5643525five period of Gastrodia elata41.480
SRR5643528five period of Gastrodia elata40.850
SRR5643658five period of Gastrodia elata38.820
SRR5643659five period of Gastrodia elata48.670
SRR5643660five period of Gastrodia elata44.480
SRR5643661five period of Gastrodia elata47.860
SRR5643662five period of Gastrodia elata45.140
SRR5643663five period of Gastrodia elata42.210
SRR5643664five period of Gastrodia elata38.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.840
SRR6049655Rhizomagastrodiae_C368-T10_good_153.270
SRR6049656Rhizomagastrodiae_C368-T07_good_140.660
SRR6049657Rhizomagastrodiae_C368-T07_good_132.370
SRR6049658Rhizomagastrodiae_C368-T04_good_124.380
SRR6049659Rhizomagastrodiae_C368-T04_good_124.550
SRR6049660Rhizomagastrodiae_C368-T01_good_133.360
SRR6049661Rhizomagastrodiae_C368-T04_good_128.150
SRR6049662Rhizomagastrodiae_C368-T01_good_141.250
SRR6049663Rhizomagastrodiae_C368-T01_good_139.930
SRR6049664Rhizomagastrodiae_C368-T10_good_147.490
SRR6049665Rhizomagastrodiae_C368-T10_good_147.490
SRP279888GastroGastrodia elata tuber 44.86
JuvenJuvenile tuber40.67
Mother_GastroMother tuber of Gastrodia elata 46.13
Mother_JuvenMother tuber of Juvenile 36.67