Detail information of GWHGAAEX004115/evm.TU.scaffold_146.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41973.00E-49FOG: PPR repeat
nrgi|672117100|ref|XP_008781730.1|6.33E-87PREDICTED: reticulon-like protein B22 [Phoenix dactylifera]
Swissprottr|Q8GWH5|RTNLT_ARATH5.00E-69Reticulon-like protein B22
trEMBLtr|M0RQD5|M0RQD5_MUSAM5.00E-85Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P08050_001}
TAIRAT1G168303.00E-49Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151304070321985-
Transcript Sequence

Network for GWHGAAEX004115

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02453.16Reticulon181401.50E-16
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms52.590
SRR2545915Juvenile tuber60.550
SRP108465SRR5643513five period of Gastrodia elata42.440
SRR5643514five period of Gastrodia elata51.630
SRR5643515five period of Gastrodia elata46.870
SRR5643524five period of Gastrodia elata56.010
SRR5643525five period of Gastrodia elata59.270
SRR5643528five period of Gastrodia elata49.220
SRR5643658five period of Gastrodia elata60.560
SRR5643659five period of Gastrodia elata57.320
SRR5643660five period of Gastrodia elata58.830
SRR5643661five period of Gastrodia elata66.600
SRR5643662five period of Gastrodia elata47.340
SRR5643663five period of Gastrodia elata49.500
SRR5643664five period of Gastrodia elata54.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_151.080
SRR6049655Rhizomagastrodiae_C368-T10_good_130.200
SRR6049656Rhizomagastrodiae_C368-T07_good_158.170
SRR6049657Rhizomagastrodiae_C368-T07_good_155.840
SRR6049658Rhizomagastrodiae_C368-T04_good_155.700
SRR6049659Rhizomagastrodiae_C368-T04_good_156.040
SRR6049660Rhizomagastrodiae_C368-T01_good_160.020
SRR6049661Rhizomagastrodiae_C368-T04_good_163.060
SRR6049662Rhizomagastrodiae_C368-T01_good_149.900
SRR6049663Rhizomagastrodiae_C368-T01_good_160.830
SRR6049664Rhizomagastrodiae_C368-T10_good_151.180
SRR6049665Rhizomagastrodiae_C368-T10_good_151.180
SRP279888GastroGastrodia elata tuber 58.34
JuvenJuvenile tuber50.67
Mother_GastroMother tuber of Gastrodia elata 34.34
Mother_JuvenMother tuber of Juvenile 31.93