Detail information of GWHGAAEX004117/evm.TU.scaffold_146.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|108760263|ref|YP_631004.1|3.00E-155homogentisate 1,2-dioxygenase [Myxococcus xanthus DK 1622]
KOGKOG14170Homogentisate 1,2-dioxygenase
nrgi|697176514|ref|XP_009597213.1|0PREDICTED: homogentisate 1,2-dioxygenase [Nicotiana tomentosiformis]
Swissprottr|Q9ZRA2|HGD_ARATH0Homogentisate 1,2-dioxygenase
trEMBLtr|A0A067ETR6|A0A067ETR6_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO58498.1}
TAIRAT5G540800homogentisate 1,2-dioxygenase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151386076430418-
Transcript Sequence

Network for GWHGAAEX004117

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04209.12HgmA242953.00E-125
PF04209.12HgmA3134726.10E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00451HGD, hmgA Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Tyrosine metabolismmap00350
Styrene degradationmap00643

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0006559Biological ProcessL-phenylalanine catabolic process
GO:0006570Biological Processtyrosine metabolic process
GO:0004411Molecular Functionhomogentisate 1,2-dioxygenase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.760
SRR2545915Juvenile tuber19.050
SRP108465SRR5643513five period of Gastrodia elata13.840
SRR5643514five period of Gastrodia elata15.070
SRR5643515five period of Gastrodia elata13.720
SRR5643524five period of Gastrodia elata15.030
SRR5643525five period of Gastrodia elata21.120
SRR5643528five period of Gastrodia elata21.000
SRR5643658five period of Gastrodia elata23.430
SRR5643659five period of Gastrodia elata15.710
SRR5643660five period of Gastrodia elata16.050
SRR5643661five period of Gastrodia elata15.710
SRR5643662five period of Gastrodia elata11.710
SRR5643663five period of Gastrodia elata13.770
SRR5643664five period of Gastrodia elata11.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.880
SRR6049655Rhizomagastrodiae_C368-T10_good_115.660
SRR6049656Rhizomagastrodiae_C368-T07_good_113.030
SRR6049657Rhizomagastrodiae_C368-T07_good_121.430
SRR6049658Rhizomagastrodiae_C368-T04_good_125.610
SRR6049659Rhizomagastrodiae_C368-T04_good_126.860
SRR6049660Rhizomagastrodiae_C368-T01_good_117.960
SRR6049661Rhizomagastrodiae_C368-T04_good_116.850
SRR6049662Rhizomagastrodiae_C368-T01_good_118.280
SRR6049663Rhizomagastrodiae_C368-T01_good_114.260
SRR6049664Rhizomagastrodiae_C368-T10_good_115.780
SRR6049665Rhizomagastrodiae_C368-T10_good_115.780
SRP279888GastroGastrodia elata tuber 13.58
JuvenJuvenile tuber14.94
Mother_GastroMother tuber of Gastrodia elata 14.16
Mother_JuvenMother tuber of Juvenile 13.85