Detail information of GWHGAAEX004123/evm.TU.scaffold_146.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|71907234|ref|YP_284821.1| | 2.00E-23 | protein kinase:GAF [Dechloromonas aromatica RCB] |
| KOG | KOG1187 | 4.00E-155 | Serine/threonine protein kinase |
| nr | gi|672178097|ref|XP_008809170.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: probable serine/threonine-protein kinase At1g18390 [Phoenix dactylifera] |
| Swissprot | tr|P0C5E2|Y1839_ARATH | 4.00E-168 | Probable serine/threonine-protein kinase At1g18390 (Precursor) |
| trEMBL | tr|V4U136|V4U136_9ROSI | 2.00E-171 | Uncharacterized protein {ECO:0000313|EMBL:ESR55851.1} |
| TAIR | AT1G18390 | 4.00E-155 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 486275 | 496867 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004123
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13947.5 | GUB_WAK_bind | 27 | 130 | 4.50E-15 |
| PF14380.5 | WAK_assoc | 165 | 228 | 4.20E-13 |
| PF00069.24 | Pkinase | 330 | 601 | 3.30E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_WAK_LRK10L-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0030247 | Molecular Function | polysaccharide binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.310 |
| SRR2545915 | Juvenile tuber | 18.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.050 |
| SRR5643514 | five period of Gastrodia elata | 36.510 | |
| SRR5643515 | five period of Gastrodia elata | 55.590 | |
| SRR5643524 | five period of Gastrodia elata | 47.700 | |
| SRR5643525 | five period of Gastrodia elata | 50.140 | |
| SRR5643528 | five period of Gastrodia elata | 51.410 | |
| SRR5643658 | five period of Gastrodia elata | 38.230 | |
| SRR5643659 | five period of Gastrodia elata | 59.150 | |
| SRR5643660 | five period of Gastrodia elata | 55.790 | |
| SRR5643661 | five period of Gastrodia elata | 72.660 | |
| SRR5643662 | five period of Gastrodia elata | 51.700 | |
| SRR5643663 | five period of Gastrodia elata | 53.230 | |
| SRR5643664 | five period of Gastrodia elata | 44.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.33 |
| Juven | Juvenile tuber | 29.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 57.79 | |
| Mother_Juven | Mother tuber of Juvenile | 48.82 |