Detail information of GWHGAAEX004125/evm.TU.scaffold_146.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|94969009|ref|YP_591057.1|3.00E-147cystathionine beta-lyase [Candidatus Koribacter versatilis Ellin345]
KOGKOG00530Cystathionine beta-lyases/cystathionine gamma-synthases
nrgi|743762971|ref|XP_010910738.1|0PREDICTED: cystathionine beta-lyase, chloroplastic [Elaeis guineensis]
Swissprottr|P53780|METC_ARATH0Cystathionine beta-lyase, chloroplastic (Precursor)
trEMBLtr|B9RGV9|B9RGV9_RICCO0Cystathionine beta-lyase, putative {ECO:0000313|EMBL:EEF49321.1}
TAIRAT3G570500cystathionine beta-lyase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151511769527020-
Transcript Sequence

Network for GWHGAAEX004125

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01053.19Cys_Met_Meta_PP1124826.10E-143
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01760metC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450

Gene Ontology

GO term OntologyName
GO:0019346Biological Processtranssulfuration
GO:0071266Biological Process'de novo' L-methionine biosynthetic process
GO:0003824Molecular Functioncatalytic activity
GO:0004121Molecular Functioncystathionine beta-lyase activity
GO:0030170Molecular Functionpyridoxal phosphate binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.650
SRR2545915Juvenile tuber34.160
SRP108465SRR5643513five period of Gastrodia elata28.840
SRR5643514five period of Gastrodia elata35.860
SRR5643515five period of Gastrodia elata32.090
SRR5643524five period of Gastrodia elata30.960
SRR5643525five period of Gastrodia elata21.270
SRR5643528five period of Gastrodia elata29.890
SRR5643658five period of Gastrodia elata30.070
SRR5643659five period of Gastrodia elata47.610
SRR5643660five period of Gastrodia elata50.490
SRR5643661five period of Gastrodia elata44.090
SRR5643662five period of Gastrodia elata52.790
SRR5643663five period of Gastrodia elata54.160
SRR5643664five period of Gastrodia elata55.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_154.980
SRR6049655Rhizomagastrodiae_C368-T10_good_161.100
SRR6049656Rhizomagastrodiae_C368-T07_good_146.310
SRR6049657Rhizomagastrodiae_C368-T07_good_162.210
SRR6049658Rhizomagastrodiae_C368-T04_good_177.050
SRR6049659Rhizomagastrodiae_C368-T04_good_178.410
SRR6049660Rhizomagastrodiae_C368-T01_good_168.430
SRR6049661Rhizomagastrodiae_C368-T04_good_161.880
SRR6049662Rhizomagastrodiae_C368-T01_good_147.130
SRR6049663Rhizomagastrodiae_C368-T01_good_164.840
SRR6049664Rhizomagastrodiae_C368-T10_good_142.220
SRR6049665Rhizomagastrodiae_C368-T10_good_142.220
SRP279888GastroGastrodia elata tuber 67.29
JuvenJuvenile tuber54.84
Mother_GastroMother tuber of Gastrodia elata 49.81
Mother_JuvenMother tuber of Juvenile 59.28