Detail information of GWHGAAEX004127/evm.TU.scaffold_146.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17925.00E-64Reticulon
nrgi|514756776|ref|XP_004963616.1|2.70E-79PREDICTED: reticulon-like protein B9-like [Setaria italica]
Swissprottr|Q9LJQ5|RTNLI_ARATH1.00E-64Reticulon-like protein B9
trEMBLtr|K3Z9H4|K3Z9H4_SETIT8.00E-80Reticulon-like protein {ECO:0000256|RuleBase:RU210713}
TAIRAT3G182605.00E-64Reticulon family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151573561582600+
Transcript Sequence

Network for GWHGAAEX004127

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02453.16Reticulon351881.90E-43
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.370
SRR2545915Juvenile tuber15.160
SRP108465SRR5643513five period of Gastrodia elata14.910
SRR5643514five period of Gastrodia elata17.330
SRR5643515five period of Gastrodia elata15.710
SRR5643524five period of Gastrodia elata21.010
SRR5643525five period of Gastrodia elata25.840
SRR5643528five period of Gastrodia elata32.170
SRR5643658five period of Gastrodia elata31.110
SRR5643659five period of Gastrodia elata15.840
SRR5643660five period of Gastrodia elata13.340
SRR5643661five period of Gastrodia elata15.010
SRR5643662five period of Gastrodia elata14.000
SRR5643663five period of Gastrodia elata13.950
SRR5643664five period of Gastrodia elata15.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.750
SRR6049655Rhizomagastrodiae_C368-T10_good_112.760
SRR6049656Rhizomagastrodiae_C368-T07_good_18.350
SRR6049657Rhizomagastrodiae_C368-T07_good_16.330
SRR6049658Rhizomagastrodiae_C368-T04_good_14.740
SRR6049659Rhizomagastrodiae_C368-T04_good_14.710
SRR6049660Rhizomagastrodiae_C368-T01_good_16.490
SRR6049661Rhizomagastrodiae_C368-T04_good_15.670
SRR6049662Rhizomagastrodiae_C368-T01_good_110.030
SRR6049663Rhizomagastrodiae_C368-T01_good_17.160
SRR6049664Rhizomagastrodiae_C368-T10_good_112.250
SRR6049665Rhizomagastrodiae_C368-T10_good_112.250
SRP279888GastroGastrodia elata tuber 14.60
JuvenJuvenile tuber14.89
Mother_GastroMother tuber of Gastrodia elata 14.72
Mother_JuvenMother tuber of Juvenile 10.29