Detail information of GWHGAAEX004132/evm.TU.scaffold_146.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|11498895|ref|NP_070126.1| | 1.00E-59 | cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304] |
| KOG | KOG0739 | 0 | AAA+-type ATPase |
| nr | gi|743801994|ref|XP_010926491.1| | 0 | PREDICTED: vacuolar protein sorting-associated protein 4B-like [Elaeis guineensis] |
| Swissprot | tr|Q9ZNT0|VPS4_ARATH | 0 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 {ECO:0000303|PubMed:17468262} |
| trEMBL | tr|A0A067KMX9|A0A067KMX9_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP37591.1} |
| TAIR | AT2G27600 | 0 | AAA-type ATPase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 713312 | 758551 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004132
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04212.17 | MIT | 7 | 70 | 1.80E-20 |
| PF00004.28 | AAA | 166 | 295 | 3.40E-43 |
| PF09336.9 | Vps4_C | 365 | 429 | 6.30E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12196 | VPS4 | Endocytosis | map04144 |
| Necroptosis | map04217 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.720 |
| SRR2545915 | Juvenile tuber | 68.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 85.880 |
| SRR5643514 | five period of Gastrodia elata | 89.620 | |
| SRR5643515 | five period of Gastrodia elata | 83.970 | |
| SRR5643524 | five period of Gastrodia elata | 87.500 | |
| SRR5643525 | five period of Gastrodia elata | 91.240 | |
| SRR5643528 | five period of Gastrodia elata | 87.220 | |
| SRR5643658 | five period of Gastrodia elata | 79.340 | |
| SRR5643659 | five period of Gastrodia elata | 95.650 | |
| SRR5643660 | five period of Gastrodia elata | 92.070 | |
| SRR5643661 | five period of Gastrodia elata | 108.190 | |
| SRR5643662 | five period of Gastrodia elata | 98.930 | |
| SRR5643663 | five period of Gastrodia elata | 95.590 | |
| SRR5643664 | five period of Gastrodia elata | 103.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 74.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 81.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 70.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 74.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 64.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 62.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 61.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 63.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 59.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 87.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 87.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 89.87 |
| Juven | Juvenile tuber | 129.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 75.76 | |
| Mother_Juven | Mother tuber of Juvenile | 111.13 |