Detail information of GWHGAAEX004133/evm.TU.scaffold_146.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|573948807|ref|XP_006656705.1| | 2.33E-39 | PREDICTED: ethylene-responsive transcription factor ERF003-like [Oryza brachyantha] |
| Swissprot | tr|Q94AW5|ERF03_ARATH | 9.00E-36 | Ethylene-responsive transcription factor ERF003 |
| trEMBL | tr|M0TIW9|M0TIW9_MUSAM | 5.00E-41 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P19320_001} |
| TAIR | AT5G25190 | 3.00E-35 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 759451 | 760263 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004133
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 7 | 54 | 6.00E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.500 |
| SRR2545915 | Juvenile tuber | 0.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.500 |
| SRR5643514 | five period of Gastrodia elata | 31.290 | |
| SRR5643515 | five period of Gastrodia elata | 12.820 | |
| SRR5643524 | five period of Gastrodia elata | 17.570 | |
| SRR5643525 | five period of Gastrodia elata | 1.810 | |
| SRR5643528 | five period of Gastrodia elata | 3.320 | |
| SRR5643658 | five period of Gastrodia elata | 1.250 | |
| SRR5643659 | five period of Gastrodia elata | 2.330 | |
| SRR5643660 | five period of Gastrodia elata | 4.130 | |
| SRR5643661 | five period of Gastrodia elata | 4.190 | |
| SRR5643662 | five period of Gastrodia elata | 1.830 | |
| SRR5643663 | five period of Gastrodia elata | 1.580 | |
| SRR5643664 | five period of Gastrodia elata | 2.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 49.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 82.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 60.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.67 |
| Juven | Juvenile tuber | 25.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.01 | |
| Mother_Juven | Mother tuber of Juvenile | 3.02 |