Detail information of GWHGAAEX004134/CADD00354.1.gene


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|222479260|ref|YP_002565497.1|5.00E-0850S ribosomal protein L39e [Halorubrum lacusprofundi ATCC 49239]
KOGKOG00023.00E-2260s ribosomal protein L39
nrgi|629122004|gb|KCW86494.1|3.22E-31hypothetical protein EUGRSUZ_B03153 [Eucalyptus grandis]
Swissprottr|P51425|RL39_MAIZE6.00E-2860S ribosomal protein L39
trEMBLtr|A0A059D7Q1|A0A059D7Q1_EUCGR1.00E-31Uncharacterized protein {ECO:0000313|EMBL:KCW86494.1}
TAIRAT2G252103.00E-22Ribosomal protein L39 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151766378767139+
Transcript Sequence

Network for GWHGAAEX004134

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00832.19Ribosomal_L3950906.80E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02924RP-L39e, RPL39 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms187.350
SRR2545915Juvenile tuber240.460
SRP108465SRR5643513five period of Gastrodia elata487.320
SRR5643514five period of Gastrodia elata626.670
SRR5643515five period of Gastrodia elata580.700
SRR5643524five period of Gastrodia elata634.130
SRR5643525five period of Gastrodia elata702.130
SRR5643528five period of Gastrodia elata644.060
SRR5643658five period of Gastrodia elata586.820
SRR5643659five period of Gastrodia elata445.020
SRR5643660five period of Gastrodia elata333.710
SRR5643661five period of Gastrodia elata413.760
SRR5643662five period of Gastrodia elata369.070
SRR5643663five period of Gastrodia elata426.350
SRR5643664five period of Gastrodia elata338.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1310.430
SRR6049655Rhizomagastrodiae_C368-T10_good_1225.330
SRR6049656Rhizomagastrodiae_C368-T07_good_1402.560
SRR6049657Rhizomagastrodiae_C368-T07_good_1288.990
SRR6049658Rhizomagastrodiae_C368-T04_good_1322.960
SRR6049659Rhizomagastrodiae_C368-T04_good_1295.610
SRR6049660Rhizomagastrodiae_C368-T01_good_1318.220
SRR6049661Rhizomagastrodiae_C368-T04_good_1305.230
SRR6049662Rhizomagastrodiae_C368-T01_good_1482.070
SRR6049663Rhizomagastrodiae_C368-T01_good_1421.250
SRR6049664Rhizomagastrodiae_C368-T10_good_1511.260
SRR6049665Rhizomagastrodiae_C368-T10_good_1511.260
SRP279888GastroGastrodia elata tuber 453.19
JuvenJuvenile tuber485.39
Mother_GastroMother tuber of Gastrodia elata 499.79
Mother_JuvenMother tuber of Juvenile 406.37