Detail information of GWHGAAEX004135/evm.TU.scaffold_146.37


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|147919477|ref|YP_686783.1|3.00E-2520S proteasome, beta subunit [Methanocella arvoryzae MRE50]
KOGKOG01801.00E-13220S proteasome, regulatory subunit beta type PSMB3/PUP3
nrgi|242064246|ref|XP_002453412.1|7.69E-141hypothetical protein SORBIDRAFT_04g005590 [Sorghum bicolor]
Swissprottr|Q9LST7|PSB3_ORYSJ8.00E-140Proteasome subunit beta type-3
trEMBLtr|C5XWW6|C5XWW6_SORBI3.00E-141Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}
TAIRAT1G217201.00E-132proteasome beta subunit C1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151773036795122-
Transcript Sequence

Network for GWHGAAEX004135

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00227.25Proteasome71861.80E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02735PSMB3 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0004175Molecular Functionendopeptidase activity
GO:0005839Cellular Componentproteasome core complex
GO:0019774Cellular Componentproteasome core complex, beta-subunit complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms74.680
SRR2545915Juvenile tuber81.880
SRP108465SRR5643513five period of Gastrodia elata123.140
SRR5643514five period of Gastrodia elata139.550
SRR5643515five period of Gastrodia elata121.340
SRR5643524five period of Gastrodia elata132.100
SRR5643525five period of Gastrodia elata95.370
SRR5643528five period of Gastrodia elata117.600
SRR5643658five period of Gastrodia elata85.240
SRR5643659five period of Gastrodia elata111.100
SRR5643660five period of Gastrodia elata110.080
SRR5643661five period of Gastrodia elata115.280
SRR5643662five period of Gastrodia elata92.280
SRR5643663five period of Gastrodia elata97.680
SRR5643664five period of Gastrodia elata88.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1110.560
SRR6049655Rhizomagastrodiae_C368-T10_good_1155.180
SRR6049656Rhizomagastrodiae_C368-T07_good_1135.440
SRR6049657Rhizomagastrodiae_C368-T07_good_1106.780
SRR6049658Rhizomagastrodiae_C368-T04_good_1113.380
SRR6049659Rhizomagastrodiae_C368-T04_good_1119.510
SRR6049660Rhizomagastrodiae_C368-T01_good_1112.080
SRR6049661Rhizomagastrodiae_C368-T04_good_1122.220
SRR6049662Rhizomagastrodiae_C368-T01_good_1157.210
SRR6049663Rhizomagastrodiae_C368-T01_good_1142.370
SRR6049664Rhizomagastrodiae_C368-T10_good_1178.680
SRR6049665Rhizomagastrodiae_C368-T10_good_1178.680
SRP279888GastroGastrodia elata tuber 133.79
JuvenJuvenile tuber141.76
Mother_GastroMother tuber of Gastrodia elata 121.05
Mother_JuvenMother tuber of Juvenile 133.16