Detail information of GWHGAAEX004136/evm.TU.scaffold_146.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672139068|ref|XP_008793310.1|0PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Phoenix dactylifera]
Swissprottr|Q689D6|RPD1_ARATH2.00E-33Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBLtr|Q8L9L1|Q8L9L1_ARATH2.00E-151Putative uncharacterized protein {ECO:0000313|EMBL:AAM65910.1}
TAIRAT3G630903.00E-152Ubiquitin carboxyl-terminal hydrolase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151802548804032-
Transcript Sequence

Network for GWHGAAEX004136

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11955.7PORR433705.00E-98
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.960
SRR2545915Juvenile tuber4.210
SRP108465SRR5643513five period of Gastrodia elata7.760
SRR5643514five period of Gastrodia elata7.250
SRR5643515five period of Gastrodia elata6.310
SRR5643524five period of Gastrodia elata7.590
SRR5643525five period of Gastrodia elata9.830
SRR5643528five period of Gastrodia elata7.780
SRR5643658five period of Gastrodia elata8.050
SRR5643659five period of Gastrodia elata7.940
SRR5643660five period of Gastrodia elata8.490
SRR5643661five period of Gastrodia elata8.950
SRR5643662five period of Gastrodia elata8.340
SRR5643663five period of Gastrodia elata7.940
SRR5643664five period of Gastrodia elata6.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.500
SRR6049655Rhizomagastrodiae_C368-T10_good_112.600
SRR6049656Rhizomagastrodiae_C368-T07_good_17.510
SRR6049657Rhizomagastrodiae_C368-T07_good_17.880
SRR6049658Rhizomagastrodiae_C368-T04_good_18.700
SRR6049659Rhizomagastrodiae_C368-T04_good_17.910
SRR6049660Rhizomagastrodiae_C368-T01_good_17.380
SRR6049661Rhizomagastrodiae_C368-T04_good_18.430
SRR6049662Rhizomagastrodiae_C368-T01_good_110.090
SRR6049663Rhizomagastrodiae_C368-T01_good_17.810
SRR6049664Rhizomagastrodiae_C368-T10_good_110.870
SRR6049665Rhizomagastrodiae_C368-T10_good_110.870
SRP279888GastroGastrodia elata tuber 6.24
JuvenJuvenile tuber9.87
Mother_GastroMother tuber of Gastrodia elata 13.16
Mother_JuvenMother tuber of Juvenile 6.92