Detail information of GWHGAAEX004141/evm.TU.scaffold_146.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-152 | FOG: PPR repeat |
| nr | gi|743818010|ref|XP_010931098.1| | 2.43E-175 | PREDICTED: pentatricopeptide repeat-containing protein At5g04780 [Elaeis guineensis] |
| Swissprot | tr|Q9LZ19|PP364_ARATH | 4.00E-152 | Pentatricopeptide repeat-containing protein At5g04780 |
| trEMBL | tr|J3NBI3|J3NBI3_ORYBR | 1.00E-161 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB12G13410.1} |
| trEMBL | tr|J3NBI3|J3NBI3_ORYBR | 9.00E-40 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB12G13410.1} |
| TAIR | AT5G04780_1 | 2.00E-152 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 861455 | 862771 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004141
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 5 | 52 | 5.90E-11 |
| PF01535.19 | PPR | 108 | 137 | 0.0003 |
| PF13041.5 | PPR_2 | 207 | 254 | 1.50E-09 |
| PF01535.19 | PPR | 282 | 305 | 0.0039 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.740 |
| SRR2545915 | Juvenile tuber | 0.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.090 |
| SRR5643514 | five period of Gastrodia elata | 1.670 | |
| SRR5643515 | five period of Gastrodia elata | 0.720 | |
| SRR5643524 | five period of Gastrodia elata | 1.220 | |
| SRR5643525 | five period of Gastrodia elata | 0.120 | |
| SRR5643528 | five period of Gastrodia elata | 0.260 | |
| SRR5643658 | five period of Gastrodia elata | 0.150 | |
| SRR5643659 | five period of Gastrodia elata | 1.250 | |
| SRR5643660 | five period of Gastrodia elata | 1.650 | |
| SRR5643661 | five period of Gastrodia elata | 1.860 | |
| SRR5643662 | five period of Gastrodia elata | 1.710 | |
| SRR5643663 | five period of Gastrodia elata | 1.180 | |
| SRR5643664 | five period of Gastrodia elata | 1.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.43 |
| Juven | Juvenile tuber | 1.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.23 | |
| Mother_Juven | Mother tuber of Juvenile | 0.42 |