Gene detail

Detail information of GWHGAAEX004142/evm.TU.scaffold_146.44

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2103	Uncharacterized conserved protein
nr	gi\|743800370\|ref\|XP_010925904.1\|	PREDICTED: ER membrane protein complex subunit 1 [Elaeis guineensis]
trEMBL	tr\|M0SLJ1\|M0SLJ1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P06240_001}
TAIR	AT5G11560	catalytics

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000151	864955	928818	+

Transcript Sequence
>GWHTAAEX004142 ATGACCGATCCTGACTCCATGACCGATCCTAGTCAGGGAGTCGTTATTCAGATTGATCAATCAGCTACATTGCCGGCATTATACAAAGCCGAGCCTTATTATTATTATGTCTTGTTCGGCTGGGCTTCACGGCAAGATCTGAGCTCCGTCAATCTTGCTGTTCGCGTCTACCCAAATTACAACTTTCGAACCACCGCCTTGATGTCGATTAGGTTCTGCTTTGGATTTGTCATACTGCTTTTGTACTCGATCACCACCTTTGCGGTTTATGAGGATCAAGTAGGGCTTGCAGATTGGCACCAAAGATACATAGGAAAAACAAAGCAGGCTGTATTCCATAGTCATAAGACAGGCAGAAAACGTGTAGTGGTTTCTACTGAAGAGAATGTAATTGCATGCATTGACCTTCGGACAGGAGATTTATTTTGGCGCCATGTTCTTGGAGAAAAGGACAAAATTAATCAAATTGATATTGCTCTTGGGAAATATATTATCACGCTCTCATCTGAAGGTCATGTTTTGAGAGCATGGAACCTTCCAGATGGGCAGCTAATTTGGGAATCTGTCCTACAAATTGCTGCACCTTCCAAATCTCTGTTGTATGTCCCGACCAAAGGTGACATAGAGAAACATATGATTTTTGTATTTGGAGGCGGATGTCTTCATTCCATATCAAGCATTGATGGTGAGAAAATATGGAGGAAAGAATTTCCTATAGAAAGCTTTGACGTACAACAAGTTTTTCAGCAAGATAACAGTGATAACTTGTACGTTGTTGGATGGCTTGGTTCTCTTCAGTTTGTCGCATATCACTTAAGTACTAAAAATGGGGATGTTTTAAAAGAAAACAAGGCATCCTTTCCTAGTGGTTTTTATGGGAGTATGGTACTCATTTCTCGAGACATTCTGGTTGCATTAGATGGCAGCAGGTCAATAATAGTCTCGATTCATTTTGCTGGGAGTTCTATTAAGTTTCATCAGACATATATTTCAGAACTTGTTCCTGAATGCTTTGGAAAGGCTGAAATTGGTCCTACGAAACTTAATGACCTTTTTGCCATAAGAACCGATCTGTGCGTGGCATTATTTAGAGTCAATAGTATAGGCCAATTGGAGGTTGCAAATACACTCAGCCATTCAACCATTATTAGTGATTCTCTTTCCATCACAGAGGAGCAGCAAGCTTTTGCAGTTGTGGATCATGCAGAAACAAAAGTTCACATTGCAGTGCGATTTGCTAATGATGTTGCAAGTGATGCTCTTAAAGAAACTGTTGAACTGGAACCACAGACTGGAAACGTGTTGAAGGTTTTCATTAATAATTATGTTAAAACAGATAGGTCTAATGGATTCAGAGCTCTTTTAGTAATGGAAGATCACTCTTTGCATTTAGTTCAACAAGGAAAGATTGTTTGGAAGAGGGAGGATGGACTTGCTTCAGTTGTAGATGTAACAACTTGTGAACTGCCATTTGAGAAGGATGGCGTCTCAGTTGCAGAAGTGGAGCACAGCCTCTTTGAATGGCTGAAGGGGCATATGCTTAAACTCAAAGGAACTCTTATGCTTGCAACCCTTGATGATAAGGCTGCTATACAAGAGATGAGATTGAAAAGTGCAGAGAAAACTAAAATGACTAGGGACCATAATGGTTTTAGAAAGTTAATTATAGTGCTAACTAAAGCTGGAAAGATTTTCGCACTTCATTCTGGAGATGGCCGAGTTGTTTGGTCTCTTCTTCTTCCTTCACTTCGCACATCGGAAGGCTGTGAATCCCCCTCTTTTCTAAAGTTATTGCATTGGCAGATTCCTCATCATCACGCAATGAATGAGAACCCTTCTGTTCTTGTAGTGGCCAATTGTGAACATGATTTTCAATTTGGCATTTTTTCAATAATTGATTCTTATACTGGAAGGGTGAGAAGCTCTAAAAAGCTGTCTCATTCAATTCTTCAAGTCATCCCACTGCCTTTTACAGACTCAACTGAGCAACGTCTTCATATTGTGATTGATTCAAATTTTGATGCACACTTGTATCCAAGAACCTCTGAGTCTATTGATATCTTTTTACGTGAAGTCTCTAATTTGTACTGGTATTCAGTAGATTCGGTAGAAGGCATTATTAAGGGCCATTCATTCCATGGAAAATGCATATCTGATATGAAAGACGGATACTGCTTTAATACTAAAGAGTTGTGGTCAATCATTTTTCCAAATCACTCTGAGAAGCTTGAGACCATTGCCACGAGAAAGATAAATGAGGTGGTTCATACACAGGCAAAGGTCATAGCTGATCAGGATGTAACATACAAGTACATATCAAAAAATTTGCTCTTTGTGGCAACCATTGCTCCTAAAGCTGTCGGTGAGATTGGCACCGTGACTCCAGAAGAAGCTTGGTTAACAGCATACCTTATTGATGCAGTAACTGGGCGCATATTACATCGTGTGACTCACCAGGGTGCCCAAGGCCCTGTGAATGCTGTTGTAAGTGAGAATTGGGTCGTATATCACTACTTCAATTTGAGAGCTCACAGATATGAAATGTCAGTTATTGAAATCTATGATCAATCTCGGGCAGATAACAAAGATATCTTGAAGCTTGTTTTGGGTAAACATAACTTGACATCTCCTTTCTCGTTATATTCTCGGCCAGAAGTGGTGGTGAAATCCCAGTCATACTTCTTTACCCATTCTGTTAAAGTAGTGACAGTGACTACAACAGCCAAGGGAATAACGTCTAAGCAGCTTCTCATTGGTACTATTGCCGATCAGGTATTGGCTCTTGACAAGCGATACCTTGATCCCAGGCGCACAGCCAACCCTACACAGTCAGAGAGGGAAGAGGGTATTTTACCGCTAACAGATTCATTGCCAATCATATCTCAGTCTTACATCACTCACTCACTCCAAGTAGAAGGCCTGCGAGGCATCGTAACCTTCCCTACCAAGCTGGAATCCACGACCCTCGTCTTTGCCTACGGTGTTGATCTCTTTTTTACAAGAATTGCCCCATCACGGACGTACGATTCTCTCACAGAGGAGTTCAACTACGCACTGTTGCTCATCACCATTATCGGTCTCGTGGTTGCTATACTGGTGACATGGGTCTTGTCGGAGAAAAAAGAACTGACAGATAAATGGAGGTAACATTATTTAATTGATTTAGACTTTACAGCTCCAAAACTGATCGAAATCCTAGCCAAAAATATTAATAATGTATTTTAATGTGTAATTTGATCAGTGAGTTACAATCATTATACACTTAGTACTACATTTAATTAGCAGTAATCATGATTTTTCCTCCTATTAGATAATTTTGGGTATGTGCAGCATTATTCTAGTTGATTTTGCTGCGGCCATTTCAGCAAATTTTGTCACTTATTCATTGGTGCAAGTTTGTTTATTAACTATAAGCATTTCCAACTTGATTCCTGCATTATTTTTCAACAAACATGCCGCTTTTTTCTACATCAATGATGCTTATTATCTTACTTTTTTTTCTTGAACTTTCTTTTTGGAATGTCCAAAGTTCTTG

Network for GWHGAAEX004142

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13360.5	PQQ_2	114	276	1.90E-08
PF07774.12	DUF1620	830	1047	6.80E-67

Protein Sequence

>GWHPAAEX004142
MTDPDSMTDPSQGVVIQIDQSATLPALYKAEPYYYYVLFGWASRQDLSSVNLAVRVYPNYNFRTTALMSIRFCFGFVILLLYSITTFAVYEDQVGLADWHQRYIGKTKQAVFHSHKTGRKRVVVSTEENVIACIDLRTGDLFWRHVLGEKDKINQIDIALGKYIITLSSEGHVLRAWNLPDGQLIWESVLQIAAPSKSLLYVPTKGDIEKHMIFVFGGGCLHSISSIDGEKIWRKEFPIESFDVQQVFQQDNSDNLYVVGWLGSLQFVAYHLSTKNGDVLKENKASFPSGFYGSMVLISRDILVALDGSRSIIVSIHFAGSSIKFHQTYISELVPECFGKAEIGPTKLNDLFAIRTDLCVALFRVNSIGQLEVANTLSHSTIISDSLSITEEQQAFAVVDHAETKVHIAVRFANDVASDALKETVELEPQTGNVLKVFINNYVKTDRSNGFRALLVMEDHSLHLVQQGKIVWKREDGLASVVDVTTCELPFEKDGVSVAEVEHSLFEWLKGHMLKLKGTLMLATLDDKAAIQEMRLKSAEKTKMTRDHNGFRKLIIVLTKAGKIFALHSGDGRVVWSLLLPSLRTSEGCESPSFLKLLHWQIPHHHAMNENPSVLVVANCEHDFQFGIFSIIDSYTGRVRSSKKLSHSILQVIPLPFTDSTEQRLHIVIDSNFDAHLYPRTSESIDIFLREVSNLYWYSVDSVEGIIKGHSFHGKCISDMKDGYCFNTKELWSIIFPNHSEKLETIATRKINEVVHTQAKVIADQDVTYKYISKNLLFVATIAPKAVGEIGTVTPEEAWLTAYLIDAVTGRILHRVTHQGAQGPVNAVVSENWVVYHYFNLRAHRYEMSVIEIYDQSRADNKDILKLVLGKHNLTSPFSLYSRPEVVVKSQSYFFTHSVKVVTVTTTAKGITSKQLLIGTIADQVLALDKRYLDPRRTANPTQSEREEGILPLTDSLPIISQSYITHSLQVEGLRGIVTFPTKLESTTLVFAYGVDLFFTRIAPSRTYDSLTEEFNYALLLITIIGLVVAILVTWVLSEKKELTDKWR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	77.220
SRP064423	SRR2545915	Juvenile tuber	81.260
SRP108465	SRR5643513	five period of Gastrodia elata	38.000
	SRR5643514	five period of Gastrodia elata	44.040
	SRR5643515	five period of Gastrodia elata	38.920
	SRR5643524	five period of Gastrodia elata	47.080
	SRR5643525	five period of Gastrodia elata	34.010
	SRR5643528	five period of Gastrodia elata	37.330
	SRR5643658	five period of Gastrodia elata	33.480
	SRR5643659	five period of Gastrodia elata	34.230
	SRR5643660	five period of Gastrodia elata	31.150
	SRR5643661	five period of Gastrodia elata	30.950
	SRR5643662	five period of Gastrodia elata	21.790
	SRR5643663	five period of Gastrodia elata	27.720
	SRR5643664	five period of Gastrodia elata	19.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	43.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	51.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	62.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	67.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	62.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.400
SRP279888	Gastro	Gastrodia elata tuber	39.26
	Juven	Juvenile tuber	43.25
	Mother_Gastro	Mother tuber of Gastrodia elata	36.54
	Mother_Juven	Mother tuber of Juvenile	45.14