Detail information of GWHGAAEX004144/evm.TU.scaffold_146.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|435850902|ref|YP_007312488.1| | 5.00E-32 | ribonuclease Z [Methanomethylovorans hollandica DSM 15978] |
| KOG | KOG2121 | 0 | Predicted metal-dependent hydrolase (beta-lactamase superfamily) |
| nr | gi|743771249|ref|XP_010915911.1| | 0 | PREDICTED: uncharacterized protein LOC105040871 [Elaeis guineensis] |
| trEMBL | tr|M0S873|M0S873_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P15320_001} |
| TAIR | AT3G16260 | 0 | tRNAse Z4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 939484 | 988508 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004144
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13691.5 | Lactamase_B_4 | 138 | 194 | 4.70E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00784 | rnz | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008033 | Biological Process | tRNA processing |
| GO:0042779 | Biological Process | tRNA 3'-trailer cleavage |
| GO:0016891 | Molecular Function | endoribonuclease activity, producing 5'-phosphomonoesters |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.860 |
| SRR2545915 | Juvenile tuber | 15.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.640 |
| SRR5643514 | five period of Gastrodia elata | 10.060 | |
| SRR5643515 | five period of Gastrodia elata | 9.310 | |
| SRR5643524 | five period of Gastrodia elata | 10.000 | |
| SRR5643525 | five period of Gastrodia elata | 4.260 | |
| SRR5643528 | five period of Gastrodia elata | 6.160 | |
| SRR5643658 | five period of Gastrodia elata | 3.490 | |
| SRR5643659 | five period of Gastrodia elata | 11.150 | |
| SRR5643660 | five period of Gastrodia elata | 12.970 | |
| SRR5643661 | five period of Gastrodia elata | 11.610 | |
| SRR5643662 | five period of Gastrodia elata | 11.900 | |
| SRR5643663 | five period of Gastrodia elata | 12.940 | |
| SRR5643664 | five period of Gastrodia elata | 13.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.60 |
| Juven | Juvenile tuber | 27.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.34 | |
| Mother_Juven | Mother tuber of Juvenile | 21.61 |