Detail information of GWHGAAEX004145/evm.TU.scaffold_146.48


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34181.00E-7760S ribosomal protein L27
nrgi|720091476|ref|XP_010245426.1|4.11E-85PREDICTED: 60S ribosomal protein L27-3 [Nelumbo nucifera]
Swissprottr|P51419|RL273_ARATH3.00E-7860S ribosomal protein L27-3
trEMBLtr|M0SMR8|M0SMR8_MUSAM6.00E-8560S ribosomal protein L27 {ECO:0000256|RuleBase:RU000575}
TAIRAT4G150001.00E-77Ribosomal L27e protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000151993581994542+
Transcript Sequence

Network for GWHGAAEX004145

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01777.17Ribosomal_L27e521351.10E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02901RP-L27e, RPL27 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms276.140
SRR2545915Juvenile tuber347.950
SRP108465SRR5643513five period of Gastrodia elata298.330
SRR5643514five period of Gastrodia elata344.060
SRR5643515five period of Gastrodia elata299.170
SRR5643524five period of Gastrodia elata290.820
SRR5643525five period of Gastrodia elata190.780
SRR5643528five period of Gastrodia elata212.210
SRR5643658five period of Gastrodia elata180.580
SRR5643659five period of Gastrodia elata342.160
SRR5643660five period of Gastrodia elata318.570
SRR5643661five period of Gastrodia elata350.850
SRR5643662five period of Gastrodia elata325.800
SRR5643663five period of Gastrodia elata318.160
SRR5643664five period of Gastrodia elata306.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1311.410
SRR6049655Rhizomagastrodiae_C368-T10_good_1305.540
SRR6049656Rhizomagastrodiae_C368-T07_good_1395.220
SRR6049657Rhizomagastrodiae_C368-T07_good_1303.900
SRR6049658Rhizomagastrodiae_C368-T04_good_1306.820
SRR6049659Rhizomagastrodiae_C368-T04_good_1266.950
SRR6049660Rhizomagastrodiae_C368-T01_good_1330.600
SRR6049661Rhizomagastrodiae_C368-T04_good_1349.920
SRR6049662Rhizomagastrodiae_C368-T01_good_1427.830
SRR6049663Rhizomagastrodiae_C368-T01_good_1399.140
SRR6049664Rhizomagastrodiae_C368-T10_good_1414.960
SRR6049665Rhizomagastrodiae_C368-T10_good_1414.960
SRP279888GastroGastrodia elata tuber 379.86
JuvenJuvenile tuber188.43
Mother_GastroMother tuber of Gastrodia elata 115.38
Mother_JuvenMother tuber of Juvenile 101.22