Detail information of GWHGAAEX004147/evm.TU.scaffold_146.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|18976544|ref|NP_577901.1|8.00E-110DNA-binding/iron metalloprotein/AP endonuclease [Pyrococcus furiosus DSM 3638]
KOGKOG27080Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold)
nrgi|695042753|ref|XP_009409043.1|0PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Musa acuminata subsp. malaccensis]
Swissprottr|O22145|OSGP2_ARATH4.00E-28Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial {ECO:0000255|HAMAP-Rule:MF_03179} (Precursor)
trEMBLtr|M0TGG7|M0TGG7_MUSAM0Probable tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_03180}
TAIRAT4G227200Actin-like ATPase superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015110843661095704-
Transcript Sequence

Network for GWHGAAEX004147

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00814.24Peptidase_M22293043.30E-89
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0002949Biological ProcesstRNA threonylcarbamoyladenosine modification
GO:0000408Cellular ComponentEKC/KEOPS complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.770
SRR2545915Juvenile tuber10.520
SRP108465SRR5643513five period of Gastrodia elata10.550
SRR5643514five period of Gastrodia elata11.740
SRR5643515five period of Gastrodia elata12.410
SRR5643524five period of Gastrodia elata12.740
SRR5643525five period of Gastrodia elata19.040
SRR5643528five period of Gastrodia elata18.750
SRR5643658five period of Gastrodia elata15.990
SRR5643659five period of Gastrodia elata11.690
SRR5643660five period of Gastrodia elata10.120
SRR5643661five period of Gastrodia elata11.100
SRR5643662five period of Gastrodia elata11.520
SRR5643663five period of Gastrodia elata11.450
SRR5643664five period of Gastrodia elata9.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.880
SRR6049655Rhizomagastrodiae_C368-T10_good_110.270
SRR6049656Rhizomagastrodiae_C368-T07_good_114.540
SRR6049657Rhizomagastrodiae_C368-T07_good_112.670
SRR6049658Rhizomagastrodiae_C368-T04_good_112.770
SRR6049659Rhizomagastrodiae_C368-T04_good_115.310
SRR6049660Rhizomagastrodiae_C368-T01_good_114.320
SRR6049661Rhizomagastrodiae_C368-T04_good_113.030
SRR6049662Rhizomagastrodiae_C368-T01_good_113.720
SRR6049663Rhizomagastrodiae_C368-T01_good_113.380
SRR6049664Rhizomagastrodiae_C368-T10_good_114.090
SRR6049665Rhizomagastrodiae_C368-T10_good_114.090
SRP279888GastroGastrodia elata tuber 11.77
JuvenJuvenile tuber16.42
Mother_GastroMother tuber of Gastrodia elata 17.50
Mother_JuvenMother tuber of Juvenile 16.77