Detail information of GWHGAAEX004155/evm.TU.scaffold_146.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-58 | FOG: PPR repeat |
| nr | gi|743770120|ref|XP_010915354.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9ZU27|PPR76_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g51965, mitochondrial (Precursor) |
| trEMBL | tr|K4BMR0|K4BMR0_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g121110.2.1} |
| TAIR | AT1G63400 | 1.00E-58 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 1204266 | 1213001 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004155
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13812.5 | PPR_3 | 185 | 235 | 1.60E-05 |
| PF17177.3 | PPR_long | 261 | 418 | 3.10E-16 |
| PF01535.19 | PPR | 428 | 452 | 0.51 |
| PF01535.19 | PPR | 466 | 492 | 0.0019 |
| PF13041.5 | PPR_2 | 529 | 576 | 5.20E-14 |
| PF13041.5 | PPR_2 | 599 | 644 | 2.00E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.500 |
| SRR2545915 | Juvenile tuber | 18.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.940 |
| SRR5643514 | five period of Gastrodia elata | 8.430 | |
| SRR5643515 | five period of Gastrodia elata | 7.270 | |
| SRR5643524 | five period of Gastrodia elata | 7.790 | |
| SRR5643525 | five period of Gastrodia elata | 10.470 | |
| SRR5643528 | five period of Gastrodia elata | 10.760 | |
| SRR5643658 | five period of Gastrodia elata | 10.370 | |
| SRR5643659 | five period of Gastrodia elata | 13.400 | |
| SRR5643660 | five period of Gastrodia elata | 14.700 | |
| SRR5643661 | five period of Gastrodia elata | 15.220 | |
| SRR5643662 | five period of Gastrodia elata | 16.610 | |
| SRR5643663 | five period of Gastrodia elata | 14.560 | |
| SRR5643664 | five period of Gastrodia elata | 16.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.43 |
| Juven | Juvenile tuber | 23.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.10 | |
| Mother_Juven | Mother tuber of Juvenile | 14.96 |