Gene detail

Detail information of GWHGAAEX004156/evm.TU.scaffold_146.59

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|302339733\|ref\|YP_003804939.1\|	4.00E-125	phosphofructokinase [Spirochaeta smaragdinae DSM 11293]
KOG	KOG2440	0	Pyrophosphate-dependent phosphofructo-1-kinase
nr	gi\|672140556\|ref\|XP_008794084.1\|	0	PREDICTED: ATP-dependent 6-phosphofructokinase 3-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q94AA4\|PFKA3_ARATH	0	ATP-dependent 6-phosphofructokinase 3 {ECO:0000255\|HAMAP-Rule:MF_03186}
trEMBL	tr\|M0THA1\|M0THA1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P13640_001}
TAIR	AT5G56630	0	phosphofructokinase 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000151	1219151	1254267	+

Transcript Sequence
>GWHTAAEX004156 ACAGCTCATTGTTCCCTATCCTTTTTTATCCTCCAATGCAAGCTTTACAGCTCATTGTTTCCATCCTCCAAAGCTTGTCCTCTTTGTGGGTCGAGCTTCTCTTCGCCGTCAGCTACGACTCGGCCATCCTTCTCTTCGGTGAATCAGGGGTGGGAAAGAGTAGATCGCTTGTACCTTCATCTCCCACTACGTTGAACCGTCAATTAAATTTCGATCGAAGAAACTGTCTTTCTCCAATTTCCTTGATCGCTGACGGGAAAGTTAGGTTTAGACTTGGGAGGGCAATGGCACCGGAGTTTAGGAATAAGCAGAAGCTTGAGCATGGAGAAGCTGGTTACGTCTTGGAGGACGTGCCACATTTATCGGATTTTATTCCTGATTTACCTACTTATCTGAATCCTCTCCAGGATAATCCAGCATACTCAGCTGTCAAGCAATATTTTGTCAACATGGATGATACAGTTGCACAGAAGATTGTGGTCCACAAATGCAGTCCTAGAGGAACCCATTTTCGGCGCGCTGGGCCTCGCCAAAGGGTTTATTTTGATTCAGATGAGGTGCATGCTTGCATTGTAACATGCGGTGGACTATGCCCAGGTCTTAATACAGTTATTCGGGAGTTGGTTTGTGGCTTGTCATATATGTATGGTGTTACTAAGATCCTTGGCATTGAGGGTGGGTATATGGGATTCTATGCTCGCAATACTATTCATCTGACGCCCAAAAGTGTCAATGATATTCATAAAAGGGGAGGCACTATACTAGGAACATCACGAGGGGGCCATGACACTTCAAAGATTGTAGATAGCATTCAAGACCGTGGCATCAATCAGGTCTACATTATAGGAGGGGATGGAACACAAAAGGGAGCCTCCGTTATTTTTCAGGAAATTAAAAGGCGCGGTCTCAAAGTTTCTGTTGTTGGCATCCCCAAGACAATTGATAATGACATAGCGGTAATTGATAAATCATTTGGTTTTGATACTGCTGTTGAAGAGGCTCAACGTGCAATTAATGCAGCACATGTTGAAGCAGAGAGTATTGAACATGGAATAGGTGTTGTCAAGCTGATGGGCCGCTACAGTGGGTTCATCGCCATGTATGCAACTCTGGCAAGCAGAGATGTGGACTGTTGCCTGATTCCAGAGTCACCCTTTTATCTGGAAGGAAATGGTGGCCTTTTTAAATTTATAGAGAAGAGACTTAAAGAGAACGGTCACATGGTTATAGTTGTTGCTGAGGGAGCCGGACAAGAGCTTATTGCTGAAAGCATGCGCTCCATGGATCACGAAGATGCTTCTGGAAATAAACTTCTCCTTGATATTGGCTATTGGTTATCTCAGAAGATCAAGGACCACTTCTCAGTCAAGAAAAAAATCGCTATAAATCTCAAGTATATCGATCCAACATATATGATCCGTGCGGTTCCCAGCAATGCTTCTGATAACGTATATTGCACTTTATTGGCTCAGAGTGCTGTGCACGGTGCAATGGCTGGTTATACAGGTTTCACAGTGGCACCTGTTAATGGCAGGCATGCTTATATACCATTTCATAGGATCACCGAAACACAAAACAACGTTGTCATCACAGACAGAATGTGGGCAAGGTTACTTTCTTCAACTAACCAGCCGAGCTTTCTCAGTAACATCGTCATTGAAGAAGCAAAGAAGAAAGATGAATCAATAACTCCATTGCTGGAAGATGAACCAAACTCTTCGGTCGAAAATTCCACAGAAGATATAAAAAAGGAAGATGAGTCTCCTGCTAAGGCTTTTATAGATAATAGCATGTATTAGTAATTAAAGCGCATCTCGGTGATTGCAGTGTGGCAGGCAAATTTGCCGGGCTAGAGAGGTGATATCCTTCAAACGCACTGTATTTTATTTTTTAGAATACGCATTCTACCATAAAGCACTGGGAATGGGTTTCTTCTCTTTTTAGAGTTACTTTGTAAGAAAAAACCATGTCTGTTATAGAAGCTGGTCTCTTTGAGGCAATTTTGTAACACTCGAAAGTTATATTTACGGAATGAGCACCTTCTTATAATCATTTTCAGCAAAATTACGTTCTTCAAAGAGTACGATAAACTCTACCCATATTTTTC

Network for GWHGAAEX004156

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00365.19	PFK	178	483	7.80E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00850	pfkA, PFK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Fructose and mannose metabolism	map00051
		Galactose metabolism	map00052
		Methane metabolism	map00680
		RNA degradation	map03018
		HIF-1 signaling pathway	map04066
		AMPK signaling pathway	map04152
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	Biological Process	glycolytic process
GO:0006002	Biological Process	fructose 6-phosphate metabolic process
GO:0005524	Molecular Function	ATP binding
GO:0003872	Molecular Function	6-phosphofructokinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	59.640
SRP064423	SRR2545915	Juvenile tuber	67.850
SRP108465	SRR5643513	five period of Gastrodia elata	47.960
	SRR5643514	five period of Gastrodia elata	51.520
	SRR5643515	five period of Gastrodia elata	54.390
	SRR5643524	five period of Gastrodia elata	53.520
	SRR5643525	five period of Gastrodia elata	46.140
	SRR5643528	five period of Gastrodia elata	51.060
	SRR5643658	five period of Gastrodia elata	41.280
	SRR5643659	five period of Gastrodia elata	68.220
	SRR5643660	five period of Gastrodia elata	70.610
	SRR5643661	five period of Gastrodia elata	69.200
	SRR5643662	five period of Gastrodia elata	73.510
	SRR5643663	five period of Gastrodia elata	72.280
	SRR5643664	five period of Gastrodia elata	72.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.660
SRP279888	Gastro	Gastrodia elata tuber	72.25
	Juven	Juvenile tuber	81.59
	Mother_Gastro	Mother tuber of Gastrodia elata	60.45
	Mother_Juven	Mother tuber of Juvenile	66.85