Detail information of GWHGAAEX004159/evm.TU.scaffold_146.62


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|470181905|ref|YP_007567780.1|4.00E-24RalF protein, translocated into host cells by the Dot/Icm system [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
KOGKOG09280Pattern-formation protein/guanine nucleotide exchange factor
nrgi|743754905|ref|XP_010923313.1|0PREDICTED: LOW QUALITY PROTEIN: ARF guanine-nucleotide exchange factor GNL2 [Elaeis guineensis]
Swissprottr|F4K2K3|GNL2_ARATH0ARF guanine-nucleotide exchange factor GNL2
trEMBLtr|A0A077RSZ2|A0A077RSZ2_WHEAT0Chromosome 3B, genomic scaffold, cultivar Chinese Spring {ECO:0000313|EMBL:CDM83623.1}
TAIRAT5G196100GNOM-like 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015114034941406707+
Transcript Sequence

Network for GWHGAAEX004159

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01369.19Sec71042932.90E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18443GBF1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0032012Biological Processregulation of ARF protein signal transduction
GO:0005086Molecular FunctionARF guanyl-nucleotide exchange factor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.580
SRR2545915Juvenile tuber9.300
SRP108465SRR5643513five period of Gastrodia elata13.670
SRR5643514five period of Gastrodia elata10.710
SRR5643515five period of Gastrodia elata9.800
SRR5643524five period of Gastrodia elata10.650
SRR5643525five period of Gastrodia elata11.220
SRR5643528five period of Gastrodia elata8.750
SRR5643658five period of Gastrodia elata12.330
SRR5643659five period of Gastrodia elata14.550
SRR5643660five period of Gastrodia elata13.260
SRR5643661five period of Gastrodia elata15.690
SRR5643662five period of Gastrodia elata14.270
SRR5643663five period of Gastrodia elata15.630
SRR5643664five period of Gastrodia elata10.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.680
SRR6049655Rhizomagastrodiae_C368-T10_good_17.920
SRR6049656Rhizomagastrodiae_C368-T07_good_110.850
SRR6049657Rhizomagastrodiae_C368-T07_good_111.230
SRR6049658Rhizomagastrodiae_C368-T04_good_112.170
SRR6049659Rhizomagastrodiae_C368-T04_good_114.750
SRR6049660Rhizomagastrodiae_C368-T01_good_19.280
SRR6049661Rhizomagastrodiae_C368-T04_good_112.850
SRR6049662Rhizomagastrodiae_C368-T01_good_111.760
SRR6049663Rhizomagastrodiae_C368-T01_good_19.700
SRR6049664Rhizomagastrodiae_C368-T10_good_19.250
SRR6049665Rhizomagastrodiae_C368-T10_good_19.250
SRP279888GastroGastrodia elata tuber 12.57
JuvenJuvenile tuber21.22
Mother_GastroMother tuber of Gastrodia elata 14.64
Mother_JuvenMother tuber of Juvenile 14.34