Gene detail

Detail information of GWHGAAEX004161/evm.TU.scaffold_146.65

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|42524005\|ref\|NP_969385.1\|	9.00E-175	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOG	KOG0054	0	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nr	gi\|743770088\|ref\|XP_010915338.1\|	0	PREDICTED: ABC transporter C family member 8 [Elaeis guineensis]
Swissprot	tr\|Q8LGU1\|AB8C_ARATH	0	ABC transporter C family member 8 (Precursor)
trEMBL	tr\|U5CZ74\|U5CZ74_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN15280.1}
TAIR	AT3G21250	0	multidrug resistance-associated protein 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000151	1447466	1454525	+

Transcript Sequence
>GWHTAAEX004161 GGACAACAGACAAACAAACAGCTTTCTAAAGCTTTCATAAATCTGAGAACCTATCCGAAGCTTTAACTACTAAATTACAATACCTCCAAAATTTTCTCTTCTTCTCTTTTCTTATTCTATCAGAAGAAGATGACAATCACATTAACATGCCTGTACAAAGTATGGGGCAACAACGTAGACGGTTCTACGAACTAACAATATTGGATCACTGTTCTCGATTGAGGGACAATGCTAGTGTACCTTTTACAGGCAGAGTGACAATTAATTAATTAAATTTAAAAAAAAATAATTAATTAGAAAAAGCTCGCTGATTTTCTTTGACAGTTATAAATAATTTCACACTGCATAGTTTGGGTGCTACTGTGCTTTCATCTTCCAAAACATTCGAGAAGACCTGAAGCTTTCTGATCATGGCTTCTGCTTGGACTCCGAAGGGCTGGTTTTGTGGGCGGTATTTTAATCTGGGAGACTCAAGTGCTCAAAGAAGTTTAATTGATGGAGTAAATCTTGTTTTTCTCCTAATTTCAGCTTTGGGTTTTCTGATATCATGTTGCAGAAGAGAGGCTCTTAGCAGAAGGAGAATCAGGAGCTGGGATTCCTTCACAATTACTGCACTGCTGTGTGCTGTTCTTAGCGTTTTGTATTTGGGCTCCATCTTACCCTTTGTTGGAAGAGGCAGCCTCATTGAATTGAATTGGGCTGTTCAATTTTTTAGGAGCATAATTTGGATTTCTCTGGCTTCCTCTCTATGCATTCAGAATCCTCGAAAAGTGCTCAAAATCATACTTTTGAGTTGGTGGATTGCGTTTTCATTCTTGATATCTGTTTTTAATCTTGAGGTGTTAATCAGAGGATCGGGAATTCGAATCTTTGATTTGATTACATGGCCTGCGAATCTGCTACTTCTGTTCTGTGCTTTCAAGCAAGTGATGAGAACCGGCTCTAATGAGGAGCAAGAAGAGAACAGCTTATCCCGCCCACTGCTTCTCCCAGAAAATGAAAGAATTGCTAATTTAAGCATAGCTAATTTGTTTAGCAGGCTGACTTTTTCGTGGCTGAATCCGCTGCTACACTTAGGCTCTTCTAAGCCACTGGCTCTTGAAGATATCCCAGGTTTAGTTTCAGAGGATGAGGCATTCCTGGCTTACCAGTCTTTCTTCAGGACATGGGAACATGAGAGGAAAAACCGATCAAAAACTAGCAACCTGGTTCTCATCTCTTTAGCCAAGTGCTATAAGAAGGAAATGCTGTTAGTTGGCTTCTACGCGTTGCTGAAATCACTGTCTGTGTCAGCCTCGCCTTTAGTTCTCAGCGCCTTCATTTCATTTTCCACCAAAGAGGAAAAAGATCTGAACTTTGGCTGCTTCCTGATTGCCTGCCTCGCCATCTTAAAGTTCCTGGATTCCATCACTCAGAGGCATTGGTTTTTTGATTCTAGAAGATTCGGAATGAGGATGCGTTCCGCAGTGATGGCGGCCATTTTTCACAAGCAGCTGAGGCTTTCAAGCCAGGGAAGAAGAAGGCACTCCATGGGGGAGATATTGAACTACATTGCAGTGGATGCTTATCGGCTAGGGGAGTTTCCATGGTGGTTTCACACGGCTTGGAGTTCTCCTCTTCAAATACTCCTTTCAGTAGTAGTGCTCATCTTAACTGTAGGCGTGAGAGGAGCGATCCCAGGAGTGATTCCCTTGATCATTTTCGGGATTCTTAACATCCCTATTGCAAGGATTCTGCAGTACAATCAGGCGCAGTTCATGGTTGCTCAGGATGAAAGGCTGAGGGCCACATCAGAGGTGCTGAACAACATGAAGATCATCAAGTTGCAATCTTGGGAAGAAAAGTTCAGGGCATTGGTTGAGTCTCTGAGAGATGTGGAGTTCAAATGGTTGAGAGATATCCAAATCACAAAATCCTTTGGGAGTGCAGTGTATTGGATGGCACCGACTGTTGTTTCTACTGTAATATTTGCTGGAACAGCAGCGCTGAAGAGCGCTCCTCTGAATGCTGGCACAATTTTCACTGTCCTGGCAGCCTTGCGCATTATTTCTGAGCCTGTCAGAATGCTGCCGGAAGCTCTTTCTGTGTTGATCCAAGTGAAAGTTTCACTAGATCGAATCGGTATCTTCTTATCAGAAGATGAGGTCAAAGATGATGGCGTGCAAAGGAGAAATTTGAGCAATATGGACCATAACATTCAACTGCAGCATGGCTGCTTCAGTTGGGATTTAGATGCGGCTATTCCAACCCTTAAGAACCTTAATTTGGGCATTAGAAAAGGGCAGAAGATTGCTGTTTGCGGACCAGTTGGCGCAGGAAAGTCATCGCTAATATATGCAATTCTTGGAGAGATGCCCAAAATTTCAGGATCAGTTACTGTATCTGGTACAACAGCTTATGTTGCCCAAACTTCATGGATTCAGAGCGGCACGATTAGAGATAACATACTTTACGGAAAGCAAATGAACGAGAAAAGGTATGATACGGCTATCAGATGCTGCGCTCTGAAGAAAGACATTGAGGCTTTTGCTTATGGAGACCTCACAGAAATTGGCCAGAAAGGTCTGAACATGAGTGGGGGGCAGAAACAGAGGCTTCAGTTAGCAAGGGCAGTATATAGTGATGCAGATATATACCTCCTTGATGATCCCTTCAGCGCAGTAGATGCACATACTGCAGCTGTTCTCTTTCATGATTGCGTGATGTCTGCTTTAGGGAACAAGACAGTGATTCTTGTGACTCATCAAGTCGAGTTTTTGGCTGAAGCAGATGGAATTGTGGTAATAGAAGATGGAGAAATCACACAGACAGGAACCTATGACCTGCTTCTGAAATCAGGAACAGCATTTGAGAAGCTTGTTAAAGCGCACCGTTCTTCGTTGACCACATTGGACTCTTCATTTCATGAGAACGAAAGAGATGAACAGATAAGAGAAGAGAAAAATAAGTTTGCCCTCAGCAGGGCGCAGTTCGTGAGGCAGAACAGTGGGAGTGAGATCTCAAGCAAAGGCATTCCAACTGTTCAGCTCACAGAAGATGAAGAAAAAGAAAGAGGAAACGTTGGGTTGAAGCCATACAGAGATTACTTCCAAGAGTCCAAAGGCTGTCTGCTCTTCGTTGTGGCCGTCGGCTGCCAGGTTGTGTTTCTAACTTTGCAGACTTTATCAGCTTATTGGATGGCATTTGCCATTCAGATGAGTCGGATCAGCAGCGGCTTCATAGTTGGAGTCTACGCAGGCTTTTCGATTCTTAGCTGCGTCTTTGCATTTCTTAGAGCATGGGTGGCAGCTGAACTTGGGCTCAAAGCTTCGAGGTCTTTCTTCACTTCTCTCATGGATTCAATATTTAAGGCTCCCATGTCTTTCTTCGACTCAACGCCGGTGGGAAGGATTTTGACCAGGGCATCTTCTGATTTATTCACACTAGATTTTGACATTCCGTATTCCCTCGTCTTCTTCTTTGTTGCTTTCGCTGAAACTTTGTCAGTAATAATAATCATGGCTACTGCGATATGGCAAGTGTTAGTGGTAGCATTCCCAATAGCCATCATAATCGCATATCTTCAGAAATACTACATGTCATCCGCACGGGAACTTGTGAGGATCAATGGAACAACAAAGGCTCCGATTATGAATTATGCAACAGAATCGTACCTCGGTGTTGTCACAATAAGGGCGTTCGGAATGATGGAGAGGTTTTTTGGGAACAACTTGAAGCTGATAGACACGGATGCCACTCTGTTTTTCCACACCATTGGCGCCATGGAATGGGTGCTTATAAGAGTCGAGTTCTTGCAAATTTTAACCATTATTACCTGTTCTATTTTCTTCGTTCTGCTTCCGCAGGGATCCATATCTCCAGGACTCTCAGGCTTTTGTCTTTCCTATGCGCTTGGCTTGTCAGCAGTCCAAGTGTTTTTCACCCGTTTCTATTCTTGCTTAGAAAACCACATCATCTCTGTAGAGCGAATAAAACAGTTCATGCATATCCCACCAGAGCCAGCTGCAATAATTGCAGAGAGCAGGCCTCCCTTTTCCTGGCCTCATGCAGGAAGAATCGACCTAGAAAACCTCAAGATAAAATACAGGCCTAATGCTCCGTTTGTTCTCAAAGGAATCACTTGTACATTTTCAGCTGGAAATAGGATTGGAGTTGTTGGGAGAACTGGAAGTGGGAAGACTACACTCATAAGTGCTCTGTTCCGTCTGGTAGATCCAGCTGAAGGGAGAATACTTATTGACGGCATTGATATCGCCTCTATAGGACTCAAAGATCTGAGGATGAAACTTAGCATAATTCCTCAAGAGCCAACTCTTTTCCGTGGAAGTGTTCGAAGTAATTTGGATCCCCTTGGAACGTATGCAGATCATGAGATCTGGAAGGCATTGGAACGCTGCCAACTGAAGTCCATAATCAGCAGCCTTCCTGCTCAGCTTGATTCTTCCGTGAGTGATGATGGTGAGAACTGGAGCGCGGGTCAGCGCCAACTCTTCTGCTTGGGTCGAGTCCTCCTCCGCAAGAACAGAATTCTTGTTCTTGATGAGGCCACTGCTTCCATTGACTCGGCGACAGATGCAATTATTCAGAGAATTATAAGGCAAGAGTTCAGCAGCTGCACAGTCATAACAATAGCTCACAGGGTTCCAACTGTAACAGACAGTGACATGGTTATGCTTCTCTCCTACGGAAAGCTATTGGAATTTGAGAAGCCTTCGAAGTTGATGGAATCCTCTCAATCCGCCTTCGCTAAGCTTGTTGCAGAGTATTGGGCAAATTACAGGAAGAACTCTTCTACATTTTTGCTCTGATGAAATTTTAATGCAATTAGGGTTTTTGATAAACATGTGTGAGGAATTTCTTAGTGTGGTATATTTTATTTACAAGTAAGCAATAT

Network for GWHGAAEX004161

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	279	549	2.40E-28
PF00005.26	ABC_tran	614	748	5.50E-20
PF00664.22	ABC_membrane	900	1163	4.70E-26
PF00005.26	ABC_tran	1233	1381	2.60E-30

Protein Sequence

>GWHPAAEX004161
MASAWTPKGWFCGRYFNLGDSSAQRSLIDGVNLVFLLISALGFLISCCRREALSRRRIRSWDSFTITALLCAVLSVLYLGSILPFVGRGSLIELNWAVQFFRSIIWISLASSLCIQNPRKVLKIILLSWWIAFSFLISVFNLEVLIRGSGIRIFDLITWPANLLLLFCAFKQVMRTGSNEEQEENSLSRPLLLPENERIANLSIANLFSRLTFSWLNPLLHLGSSKPLALEDIPGLVSEDEAFLAYQSFFRTWEHERKNRSKTSNLVLISLAKCYKKEMLLVGFYALLKSLSVSASPLVLSAFISFSTKEEKDLNFGCFLIACLAILKFLDSITQRHWFFDSRRFGMRMRSAVMAAIFHKQLRLSSQGRRRHSMGEILNYIAVDAYRLGEFPWWFHTAWSSPLQILLSVVVLILTVGVRGAIPGVIPLIIFGILNIPIARILQYNQAQFMVAQDERLRATSEVLNNMKIIKLQSWEEKFRALVESLRDVEFKWLRDIQITKSFGSAVYWMAPTVVSTVIFAGTAALKSAPLNAGTIFTVLAALRIISEPVRMLPEALSVLIQVKVSLDRIGIFLSEDEVKDDGVQRRNLSNMDHNIQLQHGCFSWDLDAAIPTLKNLNLGIRKGQKIAVCGPVGAGKSSLIYAILGEMPKISGSVTVSGTTAYVAQTSWIQSGTIRDNILYGKQMNEKRYDTAIRCCALKKDIEAFAYGDLTEIGQKGLNMSGGQKQRLQLARAVYSDADIYLLDDPFSAVDAHTAAVLFHDCVMSALGNKTVILVTHQVEFLAEADGIVVIEDGEITQTGTYDLLLKSGTAFEKLVKAHRSSLTTLDSSFHENERDEQIREEKNKFALSRAQFVRQNSGSEISSKGIPTVQLTEDEEKERGNVGLKPYRDYFQESKGCLLFVVAVGCQVVFLTLQTLSAYWMAFAIQMSRISSGFIVGVYAGFSILSCVFAFLRAWVAAELGLKASRSFFTSLMDSIFKAPMSFFDSTPVGRILTRASSDLFTLDFDIPYSLVFFFVAFAETLSVIIIMATAIWQVLVVAFPIAIIIAYLQKYYMSSARELVRINGTTKAPIMNYATESYLGVVTIRAFGMMERFFGNNLKLIDTDATLFFHTIGAMEWVLIRVEFLQILTIITCSIFFVLLPQGSISPGLSGFCLSYALGLSAVQVFFTRFYSCLENHIISVERIKQFMHIPPEPAAIIAESRPPFSWPHAGRIDLENLKIKYRPNAPFVLKGITCTFSAGNRIGVVGRTGSGKTTLISALFRLVDPAEGRILIDGIDIASIGLKDLRMKLSIIPQEPTLFRGSVRSNLDPLGTYADHEIWKALERCQLKSIISSLPAQLDSSVSDDGENWSAGQRQLFCLGRVLLRKNRILVLDEATASIDSATDAIIQRIIRQEFSSCTVITIAHRVPTVTDSDMVMLLSYGKLLEFEKPSKLMESSQSAFAKLVAEYWANYRKNSSTFLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.190
SRP064423	SRR2545915	Juvenile tuber	54.800
SRP108465	SRR5643513	five period of Gastrodia elata	33.450
	SRR5643514	five period of Gastrodia elata	65.370
	SRR5643515	five period of Gastrodia elata	46.110
	SRR5643524	five period of Gastrodia elata	54.970
	SRR5643525	five period of Gastrodia elata	5.810
	SRR5643528	five period of Gastrodia elata	10.940
	SRR5643658	five period of Gastrodia elata	13.230
	SRR5643659	five period of Gastrodia elata	27.140
	SRR5643660	five period of Gastrodia elata	31.260
	SRR5643661	five period of Gastrodia elata	32.330
	SRR5643662	five period of Gastrodia elata	40.400
	SRR5643663	five period of Gastrodia elata	41.540
	SRR5643664	five period of Gastrodia elata	51.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	88.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.460
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.460
SRP279888	Gastro	Gastrodia elata tuber	21.39
	Juven	Juvenile tuber	44.88
	Mother_Gastro	Mother tuber of Gastrodia elata	36.27
	Mother_Juven	Mother tuber of Juvenile	26.91