Detail information of GWHGAAEX004164/evm.TU.scaffold_146.68


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|518651625|ref|YP_008141145.1|6.00E-07hypothetical protein FACI_IFERC00001G0264 [Ferroplasma acidarmanus fer1]
KOGKOG31651.00E-112Predicted nucleic-acid-binding protein, contains PIN domain
nrgi|694995011|ref|XP_009410821.1|9.15E-133PREDICTED: rRNA-processing protein FCF1 homolog isoform X1 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0RWC3|M0RWC3_MUSAM3.00E-133Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P02150_001}
TAIRAT2G462301.00E-112PIN domain-like family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015115051101523126+
Transcript Sequence

Network for GWHGAAEX004164

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04900.11Fcf1901861.10E-42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14566UTP24, FCF1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0032040Cellular Componentsmall-subunit processome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.040
SRR2545915Juvenile tuber11.960
SRP108465SRR5643513five period of Gastrodia elata17.850
SRR5643514five period of Gastrodia elata19.340
SRR5643515five period of Gastrodia elata17.760
SRR5643524five period of Gastrodia elata21.040
SRR5643525five period of Gastrodia elata31.920
SRR5643528five period of Gastrodia elata30.910
SRR5643658five period of Gastrodia elata27.530
SRR5643659five period of Gastrodia elata18.050
SRR5643660five period of Gastrodia elata17.220
SRR5643661five period of Gastrodia elata16.300
SRR5643662five period of Gastrodia elata15.910
SRR5643663five period of Gastrodia elata17.330
SRR5643664five period of Gastrodia elata14.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.450
SRR6049655Rhizomagastrodiae_C368-T10_good_112.250
SRR6049656Rhizomagastrodiae_C368-T07_good_114.670
SRR6049657Rhizomagastrodiae_C368-T07_good_110.210
SRR6049658Rhizomagastrodiae_C368-T04_good_110.280
SRR6049659Rhizomagastrodiae_C368-T04_good_111.560
SRR6049660Rhizomagastrodiae_C368-T01_good_111.320
SRR6049661Rhizomagastrodiae_C368-T04_good_111.730
SRR6049662Rhizomagastrodiae_C368-T01_good_114.980
SRR6049663Rhizomagastrodiae_C368-T01_good_112.050
SRR6049664Rhizomagastrodiae_C368-T10_good_117.320
SRR6049665Rhizomagastrodiae_C368-T10_good_117.320
SRP279888GastroGastrodia elata tuber 18.08
JuvenJuvenile tuber12.40
Mother_GastroMother tuber of Gastrodia elata 25.25
Mother_JuvenMother tuber of Juvenile 18.43