Detail information of GWHGAAEX004167/evm.TU.scaffold_146.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479127515|ref|YP_005067475.1| | 3.00E-47 | hypothetical protein [Arthrospira platensis NIES-39] |
| nr | gi|695041819|ref|XP_009408532.1| | 1.14E-149 | PREDICTED: uncharacterized protein LOC103990947 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0TDQ8|M0TDQ8_MUSAM | 3.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P01180_001} |
| TAIR | AT5G60750 | 6.00E-89 | CAAX amino terminal protease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 1593165 | 1604033 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004167
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02517.15 | Abi | 259 | 344 | 2.30E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071586 | Biological Process | CAAX-box protein processing |
| GO:0004197 | Molecular Function | cysteine-type endopeptidase activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0030176 | Cellular Component | integral component of endoplasmic reticulum membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.560 |
| SRR2545915 | Juvenile tuber | 7.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.150 |
| SRR5643514 | five period of Gastrodia elata | 14.670 | |
| SRR5643515 | five period of Gastrodia elata | 11.620 | |
| SRR5643524 | five period of Gastrodia elata | 14.800 | |
| SRR5643525 | five period of Gastrodia elata | 12.540 | |
| SRR5643528 | five period of Gastrodia elata | 10.410 | |
| SRR5643658 | five period of Gastrodia elata | 8.540 | |
| SRR5643659 | five period of Gastrodia elata | 16.730 | |
| SRR5643660 | five period of Gastrodia elata | 17.740 | |
| SRR5643661 | five period of Gastrodia elata | 18.260 | |
| SRR5643662 | five period of Gastrodia elata | 16.660 | |
| SRR5643663 | five period of Gastrodia elata | 16.820 | |
| SRR5643664 | five period of Gastrodia elata | 16.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.33 |
| Juven | Juvenile tuber | 20.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.49 | |
| Mother_Juven | Mother tuber of Juvenile | 18.20 |