Gene detail

Detail information of GWHGAAEX004170/evm.TU.scaffold_146.75

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|429216804\|ref\|YP_007174794.1\|	3.00E-57	AAA ATPase [Caldisphaera lagunensis DSM 15908]
KOG	KOG0737	0	AAA+-type ATPase
nr	gi\|672171165\|ref\|XP_008805644.1\|	0	PREDICTED: uncharacterized protein LOC103718546 [Phoenix dactylifera]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	1.00E-60	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|A0A061G2D6\|A0A061G2D6_THECC	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein {ECO:0000313\|EMBL:EOY23377.1}
TAIR	AT1G64110	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000151	1679321	1738439	+

Transcript Sequence
>GWHTAAEX004170 CGGATTCCCTGCATCCTCCGGTAGAGCGTATCCGCCACATATTAGGCCATAATACGGTTAAAGGCAGTTTAATGGACTATTTCAAACCCCAAACCTGTGTGTGTGAGTGTTTTAAAATGAGGGAATCGGCTGACTTCACTGAGGAACGGGTACCCCTGAGTCATTGTCTCCAGGGATTCAATCTTCTCATCGCCAAGATCCTAGGGTTTGGAATTACGCCTAATTATAGTACCAAAGGGAAGGGCAGAAGGCAATTGGATTCGTCTGAGAATAAGAGGAGTCCAAGGAGGAGGAGAACTGGATTCTGTTTTGGATAGGTATTACAGGTGAATGAGTGAAAATGGACTCAAAGCATGTGGTGATGTCGGCGTTAGGGCTAGGGATTGGCGTCGGAATGGGAATGGGGCTTGCAGGCAGCCAGACATTCGGAAAATAGGCGGGCTTGACGACCGATATGATAGAGGAGGAGCTGATGAGGCTTGTCATGGACGGAAGCGAGAGTAAAGTTACCTTCAACGAATTCCCTTATTACCTCAGCGAGCAAACCAGAGTAGTGCTGACAAGTGCAGCCTTCGTTCACTTGAAGCAAGCTGAGTTATCCAAGTATACACGAAATCTTTCCCCTGCAAGTCGAACTATTTTACTCTCGGGGCCCACAGAACTTTATCAGCAGATGCTTGCAAAAGCTTTAGCTCACTTCTTTGAAGCCAAATTGTTGCTGTTAGATGTATCAGATTTTGTATTGAAGGTTCAGAGCAAATATGGTTTTTCAATTAAAGATTCTGCTTTGAAAAGGTCCATTTCTGAGTCAACGCTTGAACGTGTAACAAATATATTTGGATCATTTTCTTTTCTTTCTCAAAAGGAAGAACCAAAAGTTCCTTTGCGAAGACCAAGCAGTGGAGTGGATTTGAGATCAAGGGGTCTAGAAGGCAGTGGAAATATGCCAAAACATCGCAGAAATTCATCTTCTTCCGCTGATATGGTTAGCCTTTCATCAGAGAGCACTTTTATGAATCAAGGTTCCATTGCCCCTCTTAAGCGGACTGGAAGCTGGCCATTTGATGACAAGTTGCTGATACAAGCACTTTACAAGGTTCTTCTCGCAGTTTCCAAAAATAATCGTATTGTCCTCTACATTAGGGATGTCGAGGGCTTGGTACTAAGATCTCAAATGATGCATTCCATGTTCGCAAAAATGTTGAAAAGATTATTTGGATCAGTGCTGATACTTGGGTCAAGAATCGTTAAATCAAACAGTGATTATGGAGATGTGGATGAGAGTCTTGGCATTTTGTTTCCATATAACATAGAAATTAAGCCTCCACAAGATGAAAGTCATCTTGTAAGTTGGAAATCACAATTGGAAGAAGACATGAAAATGATGCGGTATCAGGATAACAAGAACCACATTACTGAGGTGCTTGCAGCCAATGATTTAGACTGTGATGACTTGGGTTCAATATGCTTATCAGACGCAATGGTTATAGGTAATTATATAGAAGAAATTGTAGTTTCTGCCGTCTCTTATCATTTGATGCACAACAGGGATCCTGAATACAGAAACGGAAAACTTATTATTTCTTCAAAGAGCTTGTCCCATGCAGTAAGTATATTTCAAGAGAGTAAGCTTAGTGATAAAGATTCTCTAAAGATGGAGGCAAATACTGATGCACCAAAGGAGGATAATTTAGAAAGCGAGGCTACTAAAGCATCTGAGACAAAATCTGACGGTTCGACTTCTGAAAACAAAAGTGAATCAGAGATGTCTGGAGTAGTTGCTAAGACTGATGGGGGCTTACCTCCAAAAGCACCTGAAGTTCTTCCTGACAATGAATTTGAGAAGCGCATCAGACCCGAAGTAATCCCACCAAATGAAATTGGGGTAACATTTGTTGATATAGGTGCTCTGGATGACATAAAAGAATCCCTTCAGGAGCTTGTCATGCTTCCCCTTCGAAGGCCAGATCTTTTTAAAGGTGGCCTCCTAAAGCCTTGTAGGGGAATACTGCTTTTTGGGCCACCCGGAACCGGGAAGACTATGCTCGCCAAAGCCATTGCCAATGAAGCTGGAGCAAGCTTCATAAATGTTTCGATGTCTACCATTACATCAAAATGGTTTGGCGAAGATGAGAAAAACGTTCGGGCTCTGTTCACCCTTGCAGCAAAGGTTTCACCCACTATCATTTTCTTGGATGAGGTTGACAGTATGCTAGGTCAAAGAACGAGGGTTGGGGAGCATGAGGCGATGCGGAAGATCAAGAATGAGTTCATGAGTCATTGGGATGGCCTTTTAACAAAACCCGGGGAGAGAATTCTAGTTCTTGCTGCTACTAACAGGCCATTTGACCTCGATGAAGCAATTATTAGGAGGTTTGAGCGCAGAATAATGGTTGGGCTGCCATCTTTGGAGAGCAGAGAACTGATTGTGAAATCTCTTCTGTCCAAAGAGAAGGTAGAAGAAGGGCTTAATTATAAGGAGCTTGCGGTAATGACAGAAGGATATAGTGGTAGTGATCTGAAGAATATGTGCGTTACAGCAGCATATCGTCCTCTTCGAGAACTCATTCAACAAGAGAGGCAAAGCGAATCGGAGAGAAAGCGGCAGCAGGCTGAGGGAGCAGAGAACTCAACTGAGGTTTCTGAAAAGGGAGAAAAAGAAGGTGAATCGCCAACAATCCTTCTGAGGCCCTTAAACATGGAAGATATGAGGCAGGCAAAGAATCAAGTAGCGTCCAGCTTTGCTGCTGAAGGATCAATAATGAGTGAGCTTAAGCAATGGAACGAATTGTATGGAGAAGGAGGCTCCAGGAAAAAGCAACAGCTCACTTACTTCCTCTAAAGATCAGATGCACATACAACAGAAAAGATTGGTGCCAGGGAAGTAACAAAATATCTGTAGATTGATCTGTTCAACATGAAGCCTTTCCTGAATATTTCAACACTGTACAGAACTTAGAGCAGGACTTTTCACTGCTGTAGGAAGAGAGGGAGGAATGGAAAGAGAACCATTTGGGCATATAATTATATTTTCTGTTTTAATGTTTGTTGTATTGTGTTTGGGGGTTCTCTTGTACTCTCTAAGATTATACTGTAATGTTTAGTGAGTTTAGGAAGATTTTAACATTTAGTGTTAAAACCTTTAGTCTTGTGAATATGAATTTGGTTATGTTGTATCTTTCTATCATAATATTGTGTTGTGAACTTATCGAATGTATAGATGATTATCTGTTAATGTATTGTTGTATTCTATGTTATGAATGTCTATATGTTATACTTTGTGCTTACC

Network for GWHGAAEX004170

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	518	648	3.40E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	65.500
SRP064423	SRR2545915	Juvenile tuber	55.700
SRP108465	SRR5643513	five period of Gastrodia elata	26.530
	SRR5643514	five period of Gastrodia elata	21.790
	SRR5643515	five period of Gastrodia elata	23.280
	SRR5643524	five period of Gastrodia elata	20.660
	SRR5643525	five period of Gastrodia elata	43.300
	SRR5643528	five period of Gastrodia elata	23.720
	SRR5643658	five period of Gastrodia elata	28.980
	SRR5643659	five period of Gastrodia elata	30.290
	SRR5643660	five period of Gastrodia elata	36.860
	SRR5643661	five period of Gastrodia elata	32.730
	SRR5643662	five period of Gastrodia elata	42.890
	SRR5643663	five period of Gastrodia elata	39.820
	SRR5643664	five period of Gastrodia elata	52.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.760
SRP279888	Gastro	Gastrodia elata tuber	38.33
	Juven	Juvenile tuber	31.50
	Mother_Gastro	Mother tuber of Gastrodia elata	38.30
	Mother_Juven	Mother tuber of Juvenile	33.29