Gene detail

Detail information of GWHGAAEX004176/evm.TU.scaffold_146.80

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|307150691\|ref\|YP_003886075.1\|	2.00E-27	ribonuclease III [Cyanothece sp. PCC 7822]
nr	gi\|743769854\|ref\|XP_010915219.1\|	3.74E-81	PREDICTED: uncharacterized protein LOC105040412 [Elaeis guineensis]
trEMBL	tr\|M0S9E2\|M0S9E2_MUSAM	1.00E-76	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P19510_001}
TAIR	AT3G13740	5.00E-56	Ribonuclease III family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000151	1806005	1840501	-

Transcript Sequence
>GWHTAAEX004176 AAGGAGGCTTTTTTTAGGGCTTGATCGAGGATACAGATCGCAACGAAGCAGCACGAGTGAGACGCAAAGCCATGGCGACGGTAACAGCCAACACCTCCGCTGTTCTTGCTAGGGGGCGGGTGAGGGCATCCACAAATCCGAGCCCTAATCCCCTCAAAATGGCCAAATCCCAGAAACCCACCCTTTGCTGCTTGGCCGCGTCTCCGCCCATGATCGCCGCTGTTATCGAGAAGCCAAAAGAAGACCTACTTTCTGCCAATTTAAGCAGCTCCGACCGATATGGCGCCAAAAGGGGTAATTTGGATGATCAATACATGGGCTGTGACAGATGGCTACCTCATGCACCCAAAGTGAAGGAACCAAAGTCAATTTATGATGCAGCAAGTTTAGCATTTATTGGTGATTGCGTTTACGAGCTCTATGCTAGGAGACACTGCTTTTATCCCCCTCTAAGCATATGTGATCTCCATGAGCGTGTAATGAAAGTAGTGCGAAGTGAATCACAGGATTTGCTCTTGAAGAAGCTCCTTGCAGAGAACTACTTGACAGAAGAAGAAAGGGATGTCGTGCGCTGGGGTAGAAACAAAAGCAACGGTAAAACAAAAACTTCTAAAAGGGTTGGGGTAGCCATTTACAATAGCTCATCATCTCTGGAAACACTTATTGGATATCTCTACCTTACTGATGTTAAACGCTTGGATAAACTAATGTATAAGCTAGGCTTCTCTACGGGCGCTTCTTCAAAGGATATTGCCAAAGAGCTTCATGCAAATTTCAGAAAGTCGCCTGCAGTGCATCAAAATTCTTCAAGAAGAGGATGATGAAGGCTGCAACACCTCCCGTTTTTTGAAGGGTGGCCGATCAGTGTGGGATGTTTAATTCTCCAACTGTTGAAGGCTAACATGTCAGCACAAAGGCAGGACCTAGCTTTCAGTTCTCTTTTTTACGAGTTTTGTAAAGCAGTGGGAATTAGGGGGTTTTACAGAACCGTAGCTTCAACTTCTGCCTCCCTCATACCCCAAAAGTTGCTGAGTTGTGTCGTCGAAGGCCCATTGAAACGTTTGCAGATGAACCCGGAGAATCATCTTCGGCATAGTGGGAGTCCTGCTTCGACTAACTTGAACAAAGTATGGAGCAACTTGAAGACTCTAATGAGTGATTCTACAGCCGACTTGATGCTAATATCAATTATTTGATGGGCATGAGTTGGCAGCTTCAGTATACGTAAGATTCCATCGAATCATGGTGCCAGATCTAATATTGGATTTTTCATGGCGTACCTAGTGACATCAGCATCCCACTACCACTACGGATCCTCAGCCCGCCAGCTACTGATTATGGTGAAGAGGAGGAAAACGAGTAATCGATAATCATCAGGTTACTTCTTTCTTTGTTTTTAATGGCTTTTCGTTTGTTTTGTTTTATTTTCTTTTCCTTTGAGTGAAAAAAAATGAAAGAGGGGGAAGCGAGCATGTGAAAGGGTAGGGAGATTATTTTATATTTGCATTGAGAACAATGCATATATTAAGTGTTGGGGGGAGTAGCTAAATTTATTTATATATTTTCTTTAGTTAATGAGATCTCTATGCTTTGCTCATTAGTCTAAATTTTCTGCCTTCTACTATGCATCAAGTAAATTGATGGAAATATTATTTAATTTAGGTCTAAAGTCAATGTTGATTATTTTTAATGCGGATGCAAGGAAGGAACATGATCACAATGCAAGATTATTTTTGAATTGCAAAATTACAAAATAATATTGAGTGGAGTAAATCTTAAACTCAATTGAATTATCCTTAAAATGCTATATACAAAAAGATATTTGAAGCTGCACAACTGTCTTATAATTATAAAATAGGGAGCACTCAAAAATAAGGGGGGGATGGGGGAGTTTTCTACCCAAGTGGTTGAAGTCGCTCCCATGCAAATTAGTGAAATTTTCTAAACAAAAACAAAAAAAGGGTGAGAGTTATCACCGACTAAGTATATTATTGTAAAAGATCTTTTGACTACTTTAAAAGTTTTCCTGTTTAACTATAATGATAAATAAAATTGCATGGCAGATATCAAATTCTATTTCAGCACTTTGGATTGATTGTTTTGTTTCCGTGTTTGTGTTGTCAAGTAATTTGTGGACCAAAAGTGTTACTGCTAGTTAATCGGTTCAACTTCCAAAAATTCGCATTTATGAAAATTGAAAAACATCACTAACGCCCAAGTCTTGGGATCGAACTGCTTAATGTGGGATAAGCGACACCCAAGCGTTTGAATTTCTGACTTTGCTTAATTGGGCGCTTGAACATGCATGGCACCAGCTTCTTTGGTCCCAATTATGCACTCAATTACAATGGCCTGCTTTGATCCAAACAATTGCACTGATACCTAAAAACAATGGAAAATGAATATTTTAACTTATAAAACCCAAAACTCAATTCATTTCTTAAAATTCTTTTAAATGTAGCCTCAATTTACTTTAAACAAGTGTTATGTATGGAAATAAGAAAGATAAAAGGAATTATGTAAAAGAATTCCTCTTGTTTATCTATAATACTGTTTACTTGTGATAACAAATTACAATAAGTTTAATTTGTATCCAAAAATTGTAAGTGCACGATTGTTTTGAGTTGCATGTCCATTATATGAATTTTCTAATGTGTGCAATTTTTAATTCTTGTGTAGGGATTTTAGGCGTATGAATTCATATTATTTATGTCATTTTAATAATGTTTATATATTTAAAATAATTGGAATTTTTGTATATTTTAAAAATCTCTACATACTAGCTTTTTGCTAAGATAATTTGTTACCTTATGAAGCCATATACTTAAATTTTAACATCTTTTGAAAATTAATTTTGTTTAATATATAGTTTTGTATATTAGTTGCTTTATATATTGTTTCGGTTAAGATTATGTTTGAAATAGGTGATGATATCAACTCTTAATTTTTCCAATTATAGACGTTTAATCTTTCTCTGTTAAAGAGGAATTTTTTGTTATCATGGAACTGCGGAAGGGAGCCTTTGGTATTGGTAATATTTCGAAAGGCCAGAGACTTGATCAGATTGTTGCTAAGAGAGATTTTTGTTAAGGACTTGTCAGTTGGAGCTTGTTTGTTGCCACTCTAATTGTACTGTTTCGACTCCAACAACTAAAAATTTAATTTATTGTCCTAATGCTTCTATATTCATTACATTAATCAAGTTGCATCTGATATGAACAGTGAGGTTTATGTTTTGAGACCTAATTTCGTTAATGAACTTTCTTTTAATGATAAGATTTGGCTTATTTATTTCAATTTGAGATTTATGCTGCCTAAGCTTTTTTACTGTGGATCGACTATATGTTCTC

Network for GWHGAAEX004176

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00636.25	Ribonuclease_3	105	204	1.40E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0004525	Molecular Function	ribonuclease III activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.000
SRP064423	SRR2545915	Juvenile tuber	11.080
SRP108465	SRR5643513	five period of Gastrodia elata	8.550
	SRR5643514	five period of Gastrodia elata	11.310
	SRR5643515	five period of Gastrodia elata	9.830
	SRR5643524	five period of Gastrodia elata	10.700
	SRR5643525	five period of Gastrodia elata	9.500
	SRR5643528	five period of Gastrodia elata	7.310
	SRR5643658	five period of Gastrodia elata	8.720
	SRR5643659	five period of Gastrodia elata	11.000
	SRR5643660	five period of Gastrodia elata	10.870
	SRR5643661	five period of Gastrodia elata	8.620
	SRR5643662	five period of Gastrodia elata	10.960
	SRR5643663	five period of Gastrodia elata	11.960
	SRR5643664	five period of Gastrodia elata	12.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.470
SRP279888	Gastro	Gastrodia elata tuber	24.27
	Juven	Juvenile tuber	18.84
	Mother_Gastro	Mother tuber of Gastrodia elata	20.25
	Mother_Juven	Mother tuber of Juvenile	18.40