Detail information of GWHGAAEX004180/evm.TU.scaffold_146.85


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41979.00E-28FOG: PPR repeat
nrgi|586642585|ref|XP_006826399.1|2.11E-121hypothetical protein AMTR_s00004p00149230 [Amborella trichopoda]
Swissprottr|Q9SXD1|PPR91_ARATH3.00E-28Pentatricopeptide repeat-containing protein At1g62670, mitochondrial (Precursor)
trEMBLtr|W1NE34|W1NE34_AMBTC8.00E-122Uncharacterized protein {ECO:0000313|EMBL:ERM93636.1}
trEMBLtr|W1NE34|W1NE34_AMBTC6.00E-11Uncharacterized protein {ECO:0000313|EMBL:ERM93636.1}
TAIRAT1G626709.00E-28rna processing factor 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000015118949391903088-
Transcript Sequence

Network for GWHGAAEX004180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_21732171.70E-13
PF01535.19PPR2422710.05
PF01535.19PPR2783060.00059
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.230
SRR2545915Juvenile tuber7.720
SRP108465SRR5643513five period of Gastrodia elata11.710
SRR5643514five period of Gastrodia elata13.910
SRR5643515five period of Gastrodia elata14.180
SRR5643524five period of Gastrodia elata13.890
SRR5643525five period of Gastrodia elata5.830
SRR5643528five period of Gastrodia elata10.640
SRR5643658five period of Gastrodia elata10.580
SRR5643659five period of Gastrodia elata8.980
SRR5643660five period of Gastrodia elata10.080
SRR5643661five period of Gastrodia elata11.610
SRR5643662five period of Gastrodia elata8.460
SRR5643663five period of Gastrodia elata10.640
SRR5643664five period of Gastrodia elata10.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.640
SRR6049655Rhizomagastrodiae_C368-T10_good_18.200
SRR6049656Rhizomagastrodiae_C368-T07_good_19.370
SRR6049657Rhizomagastrodiae_C368-T07_good_17.740
SRR6049658Rhizomagastrodiae_C368-T04_good_16.820
SRR6049659Rhizomagastrodiae_C368-T04_good_110.440
SRR6049660Rhizomagastrodiae_C368-T01_good_111.070
SRR6049661Rhizomagastrodiae_C368-T04_good_18.720
SRR6049662Rhizomagastrodiae_C368-T01_good_112.500
SRR6049663Rhizomagastrodiae_C368-T01_good_114.100
SRR6049664Rhizomagastrodiae_C368-T10_good_110.550
SRR6049665Rhizomagastrodiae_C368-T10_good_110.550
SRP279888GastroGastrodia elata tuber 4.80
JuvenJuvenile tuber8.28
Mother_GastroMother tuber of Gastrodia elata 8.42
Mother_JuvenMother tuber of Juvenile 7.95