Detail information of GWHGAAEX004185/evm.TU.scaffold_146.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379728659|ref|YP_005320855.1| | 2.00E-92 | sulfate transporter [Saprospira grandis str. Lewin] |
| KOG | KOG0236 | 0 | Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) |
| nr | gi|743769514|ref|XP_010915047.1| | 0 | PREDICTED: probable sulfate transporter 3.4 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9LW86|SUT34_ARATH | 0 | Probable sulfate transporter 3.4 |
| trEMBL | tr|B9SQC2|B9SQC2_RICCO | 0 | Sulfate transporter, putative {ECO:0000313|EMBL:EEF34198.1} |
| TAIR | AT3G15990 | 0 | sulfate transporter 3;4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 1947122 | 1977378 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004185
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00916.19 | Sulfate_transp | 23 | 402 | 6.70E-114 |
| PF01740.20 | STAS | 455 | 572 | 1.30E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008272 | Biological Process | sulfate transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0008271 | Molecular Function | secondary active sulfate transmembrane transporter activity |
| GO:0015116 | Molecular Function | sulfate transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.120 |
| SRR2545915 | Juvenile tuber | 9.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.230 |
| SRR5643514 | five period of Gastrodia elata | 9.960 | |
| SRR5643515 | five period of Gastrodia elata | 7.830 | |
| SRR5643524 | five period of Gastrodia elata | 9.970 | |
| SRR5643525 | five period of Gastrodia elata | 2.690 | |
| SRR5643528 | five period of Gastrodia elata | 2.460 | |
| SRR5643658 | five period of Gastrodia elata | 1.730 | |
| SRR5643659 | five period of Gastrodia elata | 9.630 | |
| SRR5643660 | five period of Gastrodia elata | 9.110 | |
| SRR5643661 | five period of Gastrodia elata | 7.290 | |
| SRR5643662 | five period of Gastrodia elata | 6.490 | |
| SRR5643663 | five period of Gastrodia elata | 6.940 | |
| SRR5643664 | five period of Gastrodia elata | 6.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.54 |
| Juven | Juvenile tuber | 5.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.44 | |
| Mother_Juven | Mother tuber of Juvenile | 2.33 |