Detail information of GWHGAAEX004189/evm.TU.scaffold_146.95
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695069563|ref|XP_009381766.1| | 6.08E-61 | PREDICTED: probable WRKY transcription factor 27 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O04609|WRK22_ARATH | 1.00E-56 | WRKY transcription factor 22 |
| trEMBL | tr|M0RKC7|M0RKC7_MUSAM | 2.00E-61 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P22020_001} |
| TAIR | AT4G01250 | 4.00E-56 | WRKY family transcription factor |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000151 | 2092902 | 2096568 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004189
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03106.14 | WRKY | 103 | 160 | 8.40E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | WRKY |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13425 | WRKY22 | MAPK signaling pathway - plant | map04016 |
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.410 |
| SRR2545915 | Juvenile tuber | 2.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.570 |
| SRR5643514 | five period of Gastrodia elata | 5.640 | |
| SRR5643515 | five period of Gastrodia elata | 26.520 | |
| SRR5643524 | five period of Gastrodia elata | 8.900 | |
| SRR5643525 | five period of Gastrodia elata | 10.450 | |
| SRR5643528 | five period of Gastrodia elata | 25.500 | |
| SRR5643658 | five period of Gastrodia elata | 5.350 | |
| SRR5643659 | five period of Gastrodia elata | 6.830 | |
| SRR5643660 | five period of Gastrodia elata | 2.630 | |
| SRR5643661 | five period of Gastrodia elata | 7.630 | |
| SRR5643662 | five period of Gastrodia elata | 14.720 | |
| SRR5643663 | five period of Gastrodia elata | 6.590 | |
| SRR5643664 | five period of Gastrodia elata | 16.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.21 |
| Juven | Juvenile tuber | 3.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 76.48 | |
| Mother_Juven | Mother tuber of Juvenile | 186.40 |